Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSU16_RS05635 Genome accession   NZ_CP150176
Coordinates   1106308..1106886 (+) Length   192 a.a.
NCBI ID   WP_010333638.1    Uniprot ID   A0AAP3CU61
Organism   Bacillus sp. FSL K6-1003     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101308..1111886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS05615 (NSU16_05615) hemAT 1101815..1103113 (-) 1299 WP_268447668.1 heme-based aerotactic transducer HemAT -
  NSU16_RS05620 (NSU16_05620) - 1103255..1104784 (-) 1530 WP_268447669.1 FAD-dependent oxidoreductase -
  NSU16_RS05625 (NSU16_05625) - 1104896..1105753 (+) 858 WP_010333636.1 SDR family oxidoreductase -
  NSU16_RS05630 (NSU16_05630) - 1105782..1106015 (-) 234 WP_010333637.1 IDEAL domain-containing protein -
  NSU16_RS05635 (NSU16_05635) comK 1106308..1106886 (+) 579 WP_010333638.1 competence transcription factor ComK Regulator
  NSU16_RS05640 (NSU16_05640) - 1106938..1107837 (-) 900 WP_339192654.1 SDR family oxidoreductase -
  NSU16_RS05645 (NSU16_05645) - 1108052..1108321 (+) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  NSU16_RS05650 (NSU16_05650) - 1108363..1109832 (-) 1470 WP_326226844.1 sodium:solute symporter -
  NSU16_RS05655 (NSU16_05655) - 1109829..1110029 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  NSU16_RS05660 (NSU16_05660) - 1110255..1110617 (-) 363 WP_268447671.1 hypothetical protein -
  NSU16_RS05665 (NSU16_05665) - 1110772..1111392 (+) 621 WP_010333644.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22412.71 Da        Isoelectric Point: 7.6610

>NTDB_id=964980 NSU16_RS05635 WP_010333638.1 1106308..1106886(+) (comK) [Bacillus sp. FSL K6-1003]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTLELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=964980 NSU16_RS05635 WP_010333638.1 1106308..1106886(+) (comK) [Bacillus sp. FSL K6-1003]
ATGAGTCAGAAAACTGACGCACCACTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGTTGGAGCTGC
CGGTCTCATGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958

Multiple sequence alignment