Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSU16_RS00580 Genome accession   NZ_CP150176
Coordinates   105655..107031 (+) Length   458 a.a.
NCBI ID   WP_229150208.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100655..112031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS00560 (NSU16_00560) ctsR 101008..101472 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  NSU16_RS00565 (NSU16_00565) - 101486..102043 (+) 558 WP_095714843.1 UvrB/UvrC motif-containing protein -
  NSU16_RS00570 (NSU16_00570) - 102043..103134 (+) 1092 WP_168746771.1 protein arginine kinase -
  NSU16_RS00575 (NSU16_00575) clpC 103131..105563 (+) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NSU16_RS00580 (NSU16_00580) radA 105655..107031 (+) 1377 WP_229150208.1 DNA repair protein RadA Machinery gene
  NSU16_RS00585 (NSU16_00585) disA 107035..108117 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  NSU16_RS00590 (NSU16_00590) - 108237..109337 (+) 1101 WP_168746772.1 PIN/TRAM domain-containing protein -
  NSU16_RS00595 (NSU16_00595) ispD 109352..110050 (+) 699 WP_010332753.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSU16_RS00600 (NSU16_00600) ispF 110043..110519 (+) 477 WP_010332754.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49506.03 Da        Isoelectric Point: 8.4759

>NTDB_id=964966 NSU16_RS00580 WP_229150208.1 105655..107031(+) (radA) [Bacillus sp. FSL K6-1003]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSTRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAALMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSSGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVSEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=964966 NSU16_RS00580 WP_229150208.1 105655..107031(+) (radA) [Bacillus sp. FSL K6-1003]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCTCGGGTTAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGAGGCGGAGTGGTAAAGGGATCACTTGTTTTAATTGGCGGGGACCCCGGTATCGGGAAATCGACCTT
ACTACTGCAAGTATCCGCTCAGCTATCTGGTTCAACGCGTCATGTTCTATACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTCGACTCTATTCAAACGGTTTATCAAAGTGATATCACATCGGC
TCCCGGCAGTGTATCACAAGTAAGAGAATGTACAGCCGCGCTGATGAAAATTGCAAAAACAAAAGGTATTCCGATATTTA
TTGTGGGTCATGTAACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCCTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTTCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGGCCTATTCTTGTTGAAATTCAGGCACTCATCTCGCCAACGAGCTTT
GGCAATCCGCGGCGCATGGCGACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTATTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTAGATGAACCTGCGATTGATCTTGCTA
TAGCGGTAAGTATCGCATCGAGCTTTAGAGATACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTTCAGAGGCACTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

97.817

100

0.978
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.355

98.908

0.627

Multiple sequence alignment