Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NSU16_RS00020 Genome accession   NZ_CP150176
Coordinates   3034..4146 (+) Length   370 a.a.
NCBI ID   WP_326204312.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS00005 (NSU16_00005) dnaA 1..1341 (+) 1341 WP_010332673.1 chromosomal replication initiator protein DnaA -
  NSU16_RS00010 (NSU16_00010) dnaN 1535..2671 (+) 1137 WP_010332674.1 DNA polymerase III subunit beta -
  NSU16_RS00015 (NSU16_00015) rlbA 2803..3018 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  NSU16_RS00020 (NSU16_00020) recF 3034..4146 (+) 1113 WP_326204312.1 DNA replication/repair protein RecF Machinery gene
  NSU16_RS00025 (NSU16_00025) remB 4164..4409 (+) 246 WP_010332676.1 extracellular matrix regulator RemB -
  NSU16_RS00030 (NSU16_00030) gyrB 4464..6380 (+) 1917 WP_010332677.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NSU16_RS00035 (NSU16_00035) gyrA 6592..9063 (+) 2472 WP_168746733.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42363.41 Da        Isoelectric Point: 7.1295

>NTDB_id=964962 NSU16_RS00020 WP_326204312.1 3034..4146(+) (recF) [Bacillus sp. FSL K6-1003]
MHIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKINGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=964962 NSU16_RS00020 WP_326204312.1 3034..4146(+) (recF) [Bacillus sp. FSL K6-1003]
TTGCATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCCCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCGAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGATAAACGGAGCG
ATTCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGTGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGGT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCATTTTCTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAATTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAACTGACGCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTACGGTTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

97.838

100

0.978

Multiple sequence alignment