Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSS75_RS15115 Genome accession   NZ_CP150175
Coordinates   2886144..2886890 (-) Length   248 a.a.
NCBI ID   WP_103672516.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1012     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2881144..2891890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS15090 (NSS75_15090) mreC 2881552..2882424 (-) 873 WP_103672518.1 rod shape-determining protein MreC -
  NSS75_RS15095 (NSS75_15095) mreB 2882455..2883468 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  NSS75_RS15100 (NSS75_15100) radC 2883560..2884255 (-) 696 WP_024122357.1 DNA repair protein RadC -
  NSS75_RS15105 (NSS75_15105) - 2884293..2884862 (-) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  NSS75_RS15110 (NSS75_15110) - 2885013..2886011 (-) 999 WP_024122359.1 SPOR domain-containing protein -
  NSS75_RS15115 (NSS75_15115) comC 2886144..2886890 (-) 747 WP_103672516.1 A24 family peptidase Machinery gene
  NSS75_RS15120 (NSS75_15120) - 2887031..2888323 (-) 1293 WP_268496916.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSS75_RS15125 (NSS75_15125) valS 2888383..2891025 (-) 2643 WP_339233638.1 valine--tRNA ligase -
  NSS75_RS15130 (NSS75_15130) - 2891474..2891665 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26571.11 Da        Isoelectric Point: 9.7865

>NTDB_id=964940 NSS75_RS15115 WP_103672516.1 2886144..2886890(-) (comC) [Bacillus sp. FSL K6-1012]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFVVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=964940 NSS75_RS15115 WP_103672516.1 2886144..2886890(-) (comC) [Bacillus sp. FSL K6-1012]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGTCGTTATCGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCTGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

79.839

100

0.798

Multiple sequence alignment