Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSS75_RS14880 Genome accession   NZ_CP150175
Coordinates   2845001..2847361 (-) Length   786 a.a.
NCBI ID   WP_213417786.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2840001..2852361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS14860 (NSS75_14860) - 2840079..2841632 (+) 1554 WP_339233574.1 SH3 domain-containing protein -
  NSS75_RS14865 (NSS75_14865) dtd 2841658..2842098 (-) 441 WP_010335121.1 D-aminoacyl-tRNA deacylase -
  NSS75_RS14870 (NSS75_14870) relA 2842111..2844315 (-) 2205 WP_010335122.1 GTP diphosphokinase -
  NSS75_RS14875 (NSS75_14875) - 2844483..2844995 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  NSS75_RS14880 (NSS75_14880) recJ 2845001..2847361 (-) 2361 WP_213417786.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSS75_RS14885 (NSS75_14885) - 2847428..2847763 (-) 336 WP_024122318.1 lipopolysaccharide assembly LapA domain-containing protein -
  NSS75_RS14890 (NSS75_14890) - 2847839..2848336 (-) 498 WP_024122319.1 cation:proton antiporter regulatory subunit -
  NSS75_RS14895 (NSS75_14895) secDF 2848496..2850709 (-) 2214 WP_024122320.1 protein translocase subunit SecDF -
  NSS75_RS14900 (NSS75_14900) - 2850747..2851043 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88319.94 Da        Isoelectric Point: 4.9486

>NTDB_id=964938 NSS75_RS14880 WP_213417786.1 2845001..2847361(-) (recJ) [Bacillus sp. FSL K6-1012]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDKAENARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEESIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETAMLLQSEDLRHDVHVISSEDQAKAYELDGAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=964938 NSS75_RS14880 WP_213417786.1 2845001..2847361(-) (recJ) [Bacillus sp. FSL K6-1012]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATAAGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGCTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCGGAGCTTCCGGATGTCCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAACGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTGATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
CGTGGCAAAAGCAGGATGGAATCCCGGAGTCGTCGGAATTGTTGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCCCCCTTCGGCATGCTGAAT
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTTAACAAAGGCGAGCTTGAGGAAAGTATAGTGCCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCGCAATGCTTCTTCAGTCTGAAGATCTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATATGAACTTGACGGTGCATATATTGTATTACTGGATTCACCGCCTTCGCTGGACATG
CTCGCACGTTTGTTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.639

100

0.936

Multiple sequence alignment