Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSS75_RS13470 Genome accession   NZ_CP150175
Coordinates   2609051..2609818 (-) Length   255 a.a.
NCBI ID   WP_213417747.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1012     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2604051..2614818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS13450 (NSS75_13450) - 2604225..2605037 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  NSS75_RS13455 (NSS75_13455) ccpN 2605063..2605701 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  NSS75_RS13460 (NSS75_13460) glyS 2605835..2607874 (-) 2040 WP_339233368.1 glycine--tRNA ligase subunit beta -
  NSS75_RS13465 (NSS75_13465) glyQ 2607867..2608754 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  NSS75_RS13470 (NSS75_13470) recO 2609051..2609818 (-) 768 WP_213417747.1 DNA repair protein RecO Machinery gene
  NSS75_RS13475 (NSS75_13475) - 2609855..2609998 (-) 144 WP_024122087.1 YqzL family protein -
  NSS75_RS13480 (NSS75_13480) era 2610142..2611047 (-) 906 WP_010334979.1 GTPase Era -
  NSS75_RS13485 (NSS75_13485) cdd 2611028..2611438 (-) 411 WP_024122088.1 cytidine deaminase -
  NSS75_RS13490 (NSS75_13490) - 2611552..2611929 (-) 378 WP_024122089.1 diacylglycerol kinase family protein -
  NSS75_RS13495 (NSS75_13495) ybeY 2611910..2612383 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  NSS75_RS13500 (NSS75_13500) pgpH 2612384..2614519 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29337.02 Da        Isoelectric Point: 8.3105

>NTDB_id=964931 NSS75_RS13470 WP_213417747.1 2609051..2609818(-) (recO) [Bacillus sp. FSL K6-1012]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKTNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=964931 NSS75_RS13470 WP_213417747.1 2609051..2609818(-) (recO) [Bacillus sp. FSL K6-1012]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAAAC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCAGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTATCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941

Multiple sequence alignment