Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSS75_RS11950 Genome accession   NZ_CP150175
Coordinates   2342113..2342733 (+) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus sp. FSL K6-1012     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2337113..2347733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS11910 (NSS75_11910) - 2338251..2338757 (-) 507 WP_044155315.1 PTS glucose transporter subunit IIA -
  NSS75_RS11915 (NSS75_11915) - 2338894..2339313 (+) 420 WP_101860382.1 hypothetical protein -
  NSS75_RS11920 (NSS75_11920) - 2339335..2339709 (-) 375 WP_024121828.1 YppG family protein -
  NSS75_RS11925 (NSS75_11925) - 2339897..2340085 (+) 189 WP_024121829.1 YppF family protein -
  NSS75_RS11930 (NSS75_11930) - 2340120..2340491 (-) 372 WP_024121830.1 YppE family protein -
  NSS75_RS11935 (NSS75_11935) - 2340537..2340782 (-) 246 WP_095713163.1 DUF5446 family protein -
  NSS75_RS11940 (NSS75_11940) sspM 2340980..2341084 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  NSS75_RS11945 (NSS75_11945) - 2341110..2342072 (-) 963 WP_095713164.1 DUF2515 domain-containing protein -
  NSS75_RS11950 (NSS75_11950) recU 2342113..2342733 (+) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  NSS75_RS11955 (NSS75_11955) - 2342755..2345502 (+) 2748 WP_339233204.1 PBP1A family penicillin-binding protein -
  NSS75_RS11960 (NSS75_11960) - 2345575..2346069 (-) 495 WP_101860380.1 YpoC family protein -
  NSS75_RS11965 (NSS75_11965) nth 2346066..2346725 (-) 660 WP_198098402.1 endonuclease III -
  NSS75_RS11970 (NSS75_11970) dnaD 2346744..2347442 (-) 699 WP_095713168.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=964919 NSS75_RS11950 WP_024121833.1 2342113..2342733(+) (recU) [Bacillus sp. FSL K6-1012]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=964919 NSS75_RS11950 WP_024121833.1 2342113..2342733(+) (recU) [Bacillus sp. FSL K6-1012]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGTAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971

Multiple sequence alignment