Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSS75_RS08955 Genome accession   NZ_CP150175
Coordinates   1721633..1722532 (+) Length   299 a.a.
NCBI ID   WP_326323818.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1012     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1716633..1727532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS08935 (NSS75_08935) - 1717302..1719032 (+) 1731 WP_339237037.1 hypothetical protein -
  NSS75_RS08940 (NSS75_08940) - 1719029..1719310 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  NSS75_RS08945 (NSS75_08945) sucC 1719484..1720641 (+) 1158 WP_339237041.1 ADP-forming succinate--CoA ligase subunit beta -
  NSS75_RS08950 (NSS75_08950) sucD 1720670..1721572 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  NSS75_RS08955 (NSS75_08955) dprA 1721633..1722532 (+) 900 WP_326323818.1 DNA-processing protein DprA Machinery gene
  NSS75_RS08960 (NSS75_08960) topA 1722723..1724798 (+) 2076 WP_339237046.1 type I DNA topoisomerase -
  NSS75_RS08965 (NSS75_08965) trmFO 1724874..1726181 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS75_RS08970 (NSS75_08970) xerC 1726249..1727163 (+) 915 WP_024121392.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32924.11 Da        Isoelectric Point: 9.2092

>NTDB_id=964914 NSS75_RS08955 WP_326323818.1 1721633..1722532(+) (dprA) [Bacillus sp. FSL K6-1012]
MDQAAACLITCRINQLLSPSLLLKWWKADPSLSLSNPSCALETASRGKVKAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=964914 NSS75_RS08955 WP_326323818.1 1721633..1722532(+) (dprA) [Bacillus sp. FSL K6-1012]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCATTGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCGCGCGGCAAAGTAAAGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATTCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATTAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTAGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.946

100

0.839
  dprA Legionella pneumophila strain ERS1305867

40.426

94.314

0.381

Multiple sequence alignment