Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSS75_RS08120 Genome accession   NZ_CP150175
Coordinates   1556179..1556457 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus sp. FSL K6-1012     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551179..1561457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS08100 (NSS75_08100) - 1552371..1553282 (+) 912 WP_268498072.1 ketopantoate reductase family protein -
  NSS75_RS08105 (NSS75_08105) - 1553310..1554542 (-) 1233 WP_024121250.1 aminopeptidase -
  NSS75_RS08110 (NSS75_08110) - 1554656..1554787 (-) 132 WP_024121251.1 protein YkpC -
  NSS75_RS08115 (NSS75_08115) mreBH 1554890..1555897 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  NSS75_RS08120 (NSS75_08120) abrB 1556179..1556457 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  NSS75_RS08125 (NSS75_08125) kinC 1556648..1557934 (+) 1287 WP_095714715.1 two-component sensor histidine kinase KinC -
  NSS75_RS08130 (NSS75_08130) - 1557950..1558780 (+) 831 WP_339236910.1 gamma-glutamylcyclotransferase -
  NSS75_RS08135 (NSS75_08135) ktrC 1558852..1559517 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  NSS75_RS08140 (NSS75_08140) ade 1559674..1561407 (+) 1734 WP_339236913.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=964913 NSS75_RS08120 WP_024121253.1 1556179..1556457(+) (abrB) [Bacillus sp. FSL K6-1012]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=964913 NSS75_RS08120 WP_024121253.1 1556179..1556457(+) (abrB) [Bacillus sp. FSL K6-1012]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATCAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565

Multiple sequence alignment