Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSS75_RS05930 Genome accession   NZ_CP150175
Coordinates   1154437..1155015 (+) Length   192 a.a.
NCBI ID   WP_024120818.1    Uniprot ID   A0A7G7UAM4
Organism   Bacillus sp. FSL K6-1012     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149437..1160015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS05910 (NSS75_05910) hemAT 1149945..1151243 (-) 1299 WP_339236473.1 heme-based aerotactic transducer HemAT -
  NSS75_RS05915 (NSS75_05915) - 1151384..1152913 (-) 1530 WP_339236476.1 FAD-dependent oxidoreductase -
  NSS75_RS05920 (NSS75_05920) - 1153025..1153882 (+) 858 WP_339236479.1 SDR family oxidoreductase -
  NSS75_RS05925 (NSS75_05925) - 1153911..1154144 (-) 234 WP_010333637.1 IDEAL domain-containing protein -
  NSS75_RS05930 (NSS75_05930) comK 1154437..1155015 (+) 579 WP_024120818.1 competence transcription factor ComK Regulator
  NSS75_RS05935 (NSS75_05935) - 1155061..1155960 (-) 900 WP_101863809.1 SDR family oxidoreductase -
  NSS75_RS05940 (NSS75_05940) - 1156163..1156432 (+) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  NSS75_RS05945 (NSS75_05945) - 1156473..1157942 (-) 1470 WP_024120821.1 sodium:solute symporter -
  NSS75_RS05950 (NSS75_05950) - 1157939..1158139 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  NSS75_RS05955 (NSS75_05955) - 1158365..1158727 (-) 363 WP_024120822.1 hypothetical protein -
  NSS75_RS05960 (NSS75_05960) - 1158883..1159503 (+) 621 WP_024120823.1 TVP38/TMEM64 family protein -
  NSS75_RS05965 (NSS75_05965) lepB 1159505..1160005 (+) 501 WP_024120824.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22430.74 Da        Isoelectric Point: 7.6610

>NTDB_id=964899 NSS75_RS05930 WP_024120818.1 1154437..1155015(+) (comK) [Bacillus sp. FSL K6-1012]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=964899 NSS75_RS05930 WP_024120818.1 1154437..1155015(+) (comK) [Bacillus sp. FSL K6-1012]
ATGAGTCAGAAAACTGACGCACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.354

100

0.964

Multiple sequence alignment