Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACICHK_RS08820 Genome accession   NZ_CP174283
Coordinates   1930738..1932093 (-) Length   451 a.a.
NCBI ID   WP_406836475.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925738..1937093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS08800 (ACICHK_08800) - 1926618..1926971 (-) 354 WP_406836472.1 DUF6167 family protein -
  ACICHK_RS08805 (ACICHK_08805) - 1926979..1927413 (-) 435 WP_406836473.1 DUF948 domain-containing protein -
  ACICHK_RS08810 (ACICHK_08810) - 1927575..1929743 (+) 2169 WP_406836474.1 ATP-binding protein -
  ACICHK_RS08815 (ACICHK_08815) rpsD 1929783..1930397 (-) 615 WP_151468465.1 30S ribosomal protein S4 -
  ACICHK_RS08820 (ACICHK_08820) rarA 1930738..1932093 (-) 1356 WP_406836475.1 replication-associated recombination protein A Machinery gene
  ACICHK_RS08825 (ACICHK_08825) - 1932138..1932776 (-) 639 WP_406836476.1 vitamin K epoxide reductase family protein -
  ACICHK_RS08830 (ACICHK_08830) - 1932916..1933782 (+) 867 WP_406836477.1 ABC transporter ATP-binding protein -
  ACICHK_RS08835 (ACICHK_08835) - 1933779..1934627 (+) 849 WP_406836478.1 ABC transporter permease -
  ACICHK_RS08840 (ACICHK_08840) - 1934585..1935895 (+) 1311 WP_406836479.1 sensor histidine kinase -
  ACICHK_RS08845 (ACICHK_08845) vraR 1935892..1936515 (+) 624 WP_103547803.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48093.55 Da        Isoelectric Point: 6.5741

>NTDB_id=964883 ACICHK_RS08820 WP_406836475.1 1930738..1932093(-) (rarA) [Streptomyces sp. AHU1]
MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVAEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATDKRFVELSAITAGVKEVRAVIDGARRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALASERGLKDSVALPGDAEDHLLRIAGGDARRALTALEAAAGAALDKGEPE
ITLRTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALEDVRKGHAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAAQRYAPEALADREYYAPTRHGAEARYADAVEWTRKHLGRGRT

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=964883 ACICHK_RS08820 WP_406836475.1 1930738..1932093(-) (rarA) [Streptomyces sp. AHU1]
GTGGAGCCCGACCTGTTCACCGCCGCCGCAGAAGAACGCCAGGAGAAGGACCCCGCCGGCAGCCCCCTGGCCGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGGCAGCAGCACCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTCGTGGCCG
AGGGGAGCGGCGGTCCGGCCGGACCGTCCTCGGTGATCCTCTGGGGCCCGCCGGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCCAAGGCCACCGACAAGCGCTTCGTGGAACTGTCCGCGATCACCGCGGGCGTCAAGGAGGTGCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCGCCGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTCCTCCCGGCCGTGGAGAACCGCTGGGTGACGCTGATCGCCGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTCCTGCTCACCCTCGAACCGCTCACCGACGACGACCTGCGCGGCCTGCT
GCGCCGGGCGCTCGCCTCGGAGCGCGGCCTCAAGGACTCCGTCGCCCTGCCCGGGGACGCCGAGGACCACCTGCTGCGGA
TCGCCGGCGGTGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCGGCCGGCGCCGCGCTCGACAAGGGCGAGCCGGAG
ATCACCCTGCGGACGCTGGAGGAGACCGTCGACCGCGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCGAGCGCGCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCCGCCCTGCACTACCTGGCCCGGATGATCGAGGCGG
GCGAGGACCCCCGGTTCATCGCCCGCCGTCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGATCCGAACGCGCTG
CCCATAGCCGTGGCCGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCCGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTGGCGCTGGCCCCGAAGTCCAACGCCGCGACCACGGCCATCGGCGCCGCCCTGGAGGACGTGCGCAAGGGGCACG
CGGGCCCGGTGCCGGCCCATCTGCGCGACGGGCACTACAAGGGCGCGGCCAAGCTCGGGCACGCCCAGGGGTACGTGTAT
CCGCACGACCTGCCCGAGGGCATCGCGGCCCAGCGGTACGCGCCCGAGGCGCTCGCGGACCGGGAGTACTACGCGCCGAC
CCGGCACGGCGCCGAGGCGCGCTATGCCGACGCGGTGGAGTGGACCAGGAAACACCTCGGTAGAGGGCGTACCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.278

91.574

0.415

Multiple sequence alignment