Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACJIZ2_RS03905 Genome accession   NZ_CP174273
Coordinates   798625..799863 (-) Length   412 a.a.
NCBI ID   WP_406811792.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 strain MB1159     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 793625..804863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJIZ2_RS03895 (ACJIZ2_03895) - 796434..797462 (+) 1029 WP_001044673.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -
  ACJIZ2_RS03900 (ACJIZ2_03900) - 797468..798463 (+) 996 WP_001208051.1 hypothetical protein -
  ACJIZ2_RS03905 (ACJIZ2_03905) kpsS 798625..799863 (-) 1239 WP_406811792.1 capsule biosynthesis protein Regulator
  ACJIZ2_RS03910 (ACJIZ2_03910) - 799898..801925 (-) 2028 WP_029700839.1 capsular polysaccharide biosynthesis protein -
  ACJIZ2_RS03915 (ACJIZ2_03915) kdsB 801922..802662 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACJIZ2_RS03920 (ACJIZ2_03920) - 802672..804348 (-) 1677 WP_001327874.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48709.24 Da        Isoelectric Point: 10.0760

>NTDB_id=964808 ACJIZ2_RS03905 WP_406811792.1 798625..799863(-) (kpsS) [Escherichia coli O25b:H4-ST131 strain MB1159]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKGWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGGYYGGVKFENALGM
NKDFLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=964808 ACJIZ2_RS03905 WP_406811792.1 798625..799863(-) (kpsS) [Escherichia coli O25b:H4-ST131 strain MB1159]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAAGGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGACATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGGTTATTATGGAGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAAGATTTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

94.417

0.376