Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACI6TB_RS06185 Genome accession   NZ_CP174270
Coordinates   1364669..1366045 (-) Length   458 a.a.
NCBI ID   WP_406812060.1    Uniprot ID   -
Organism   Histophilus somni strain HSNMG-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359669..1371045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6TB_RS06175 (ACI6TB_06175) - 1361383..1364091 (-) 2709 WP_406812059.1 DNA translocase FtsK 4TM domain-containing protein -
  ACI6TB_RS06180 (ACI6TB_06180) lrp 1364093..1364569 (-) 477 WP_011609342.1 leucine-responsive transcriptional regulator Lrp -
  ACI6TB_RS06185 (ACI6TB_06185) radA/sms 1364669..1366045 (-) 1377 WP_406812060.1 DNA repair protein RadA Machinery gene
  ACI6TB_RS06190 (ACI6TB_06190) - 1366055..1367098 (-) 1044 WP_406812061.1 inorganic triphosphatase -
  ACI6TB_RS06195 (ACI6TB_06195) - 1367241..1367921 (+) 681 WP_011609345.1 TIGR00153 family protein -
  ACI6TB_RS06200 (ACI6TB_06200) - 1367948..1369210 (+) 1263 WP_011609346.1 inorganic phosphate transporter -
  ACI6TB_RS06205 (ACI6TB_06205) - 1369315..1369926 (+) 612 WP_012341227.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49597.22 Da        Isoelectric Point: 8.3935

>NTDB_id=964775 ACI6TB_RS06185 WP_406812060.1 1364669..1366045(-) (radA/sms) [Histophilus somni strain HSNMG-1]
MAKSPKTAYVCNDCGAEFARWQGQCSACKAWNTISEVRLVSTAKVKNDRFSGYAGETKAKIQTLAEISLQETPRFTSGFR
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQSMTALYITGEESLQQVAMRANRLGLPTDRLQLLSETSIEQI
CHLADQLKPQIIVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGESDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVMVVWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEHNRLALLLAVLHRHGGLQMSDQDIFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFANKPKSAVENMQVFTVKKLADSLAILDNF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=964775 ACI6TB_RS06185 WP_406812060.1 1364669..1366045(-) (radA/sms) [Histophilus somni strain HSNMG-1]
ATGGCAAAATCACCCAAAACAGCCTACGTGTGTAATGACTGCGGTGCGGAGTTTGCCCGTTGGCAAGGACAGTGTTCTGC
ATGTAAAGCATGGAATACGATTAGCGAAGTGCGGTTAGTTTCTACAGCAAAAGTGAAAAATGATCGTTTTAGCGGATATG
CAGGAGAAACGAAAGCCAAAATTCAAACTTTAGCTGAAATCAGTTTGCAAGAAACGCCTCGTTTTACCAGTGGTTTTAGA
GAATTAGATCGTGTATTGGGGGGCGGAATTGTGCCGGGTAGTGCGATTTTAATCGGTGGGCATCCCGGTGCAGGAAAAAG
TACCCTACTGTTACAAGTGATGTGTGGACTTGCTCAAAGTATGACCGCACTTTATATCACGGGCGAAGAAAGCCTTCAAC
AAGTTGCTATGCGAGCTAATCGTTTAGGATTGCCAACGGATCGTTTGCAACTCCTATCTGAAACCTCAATTGAACAAATT
TGTCATCTTGCTGATCAACTAAAGCCGCAAATTATCGTTATTGACTCTATTCAGGTAATGCATTTATCTGATATTCAATC
TTCCCCCGGAAGTGTAGCTCAAGTGCGTGAATGTGCAGCATTTTTGACCCGTTATGCTAAGACAAGGCAAGTTGCCATTA
TCATGGTCGGTCATGTAACGAAAGATGGAACGTTGGCAGGGCCAAAGGTATTAGAACATGCAATTGATGCATCTTTATTG
TTAGAAGGCGAATCCGATTCACGCTATCGCACTTTGCGTAGTCATAAGAATCGTTTTGGTGCGGTGAATGAATTGGGTGT
TTTTGCGATGACAGAGCAAGGTTTGAGAGAGGTTAAAAATCCTTCTGCGATTTTTTTAAGTCGTGGTGATGAACAAACGT
CAGGAAGTTCCGTGATGGTAGTATGGGAAGGAACTCGTCCTTTATTAGTTGAAATTCAAGCACTTGTTGATCATTCCATG
TTAGCCAATCCAAGACGTGTTGCAGTAGGTTTAGAACATAATCGATTAGCATTGCTTCTAGCGGTATTACATCGTCATGG
CGGTTTACAAATGTCCGATCAAGATATTTTTGTTAATGTTGTTGGCGGGGTAAAAGTAACGGAAACCAGTGCCGATCTTG
CCTTATTGCTGGCATTAATTTCCAGCTTTCGTAATCGACCTTTGCCACAAGATTTAGTCGTGTTCGGCGAGGTAGGTTTA
GCGGGGGAAATTCGCCCTGTACCAAGTGGACAGGAACGTATTAGTGAAGCAGCAAAGCACGGTTTTAAGCGAGCTATTGT
TCCCTTTGCAAATAAACCGAAAAGTGCGGTCGAAAATATGCAAGTTTTTACAGTCAAGAAATTAGCGGATTCATTGGCGA
TATTAGATAATTTTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(78-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.277

100

0.474
  radA Streptococcus pneumoniae Rx1

46.62

93.668

0.437
  radA Streptococcus pneumoniae D39

46.62

93.668

0.437
  radA Streptococcus pneumoniae R6

46.62

93.668

0.437
  radA Streptococcus pneumoniae TIGR4

46.62

93.668

0.437
  radA Streptococcus mitis NCTC 12261

46.62

93.668

0.437
  radA Streptococcus mitis SK321

46.62

93.668

0.437