Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ41_RS02990 Genome accession   NZ_CP150172
Coordinates   590333..591709 (+) Length   458 a.a.
NCBI ID   WP_339210955.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-8210     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585333..596709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ41_RS02970 (NSQ41_02970) - 585785..586423 (-) 639 WP_339198711.1 YigZ family protein -
  NSQ41_RS02975 (NSQ41_02975) - 586593..587750 (+) 1158 WP_339210953.1 histidine kinase -
  NSQ41_RS02980 (NSQ41_02980) - 587819..588496 (+) 678 WP_063386301.1 response regulator transcription factor -
  NSQ41_RS02985 (NSQ41_02985) - 589192..590031 (+) 840 WP_066247016.1 DegV family protein -
  NSQ41_RS02990 (NSQ41_02990) comFA 590333..591709 (+) 1377 WP_339210955.1 DEAD/DEAH box helicase Machinery gene
  NSQ41_RS02995 (NSQ41_02995) - 591848..592123 (+) 276 WP_063386299.1 competence protein ComFB -
  NSQ41_RS03000 (NSQ41_03000) - 592132..592821 (+) 690 WP_339211596.1 ComF family protein -
  NSQ41_RS03005 (NSQ41_03005) - 592893..593315 (+) 423 WP_063386298.1 TIGR03826 family flagellar region protein -
  NSQ41_RS03010 (NSQ41_03010) flgM 593406..593675 (+) 270 WP_339210956.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ41_RS03015 (NSQ41_03015) - 593916..594395 (+) 480 WP_339210957.1 flagellar protein FlgN -
  NSQ41_RS03020 (NSQ41_03020) flgK 594410..595915 (+) 1506 WP_339210959.1 flagellar hook-associated protein FlgK -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 51529.69 Da        Isoelectric Point: 8.9974

>NTDB_id=964774 NSQ41_RS02990 WP_339210955.1 590333..591709(+) (comFA) [Aeribacillus sp. FSL K6-8210]
MHDHDLQKHLLGRHLLSNELPFSMDAVQNAPFVEIEQGVVKKSGFFYCNRCGNDQPFLFAGFDCARCKKFCHYCRNCIMM
GRVSECSKLVSFPRREKEEKHSIQSDQTNFLQWDGELSPAQKRASDRVTESVLQRTDCLIWAVCGAGKTEVLFAGINTAL
QKGLFVCIAAPRTDVVLELGPRLKNVFPSIDVAVLYGGSEDRLKLSPITISTTHQLLRYKEAFDVVILDEVDAFPYSVDS
ALQFAVEKARKRNSSLIYLTATPSSSIKRLFKPSEIVKIPARYHGYPLPVPEFKWCGNWKKRLEKGKLPKNIITWAAEQM
QKERQAFLFVPEIKVLHDVVPLLKKLNSAVEGVHAEDPQRKEKVRAFRNGRIPIIVTTTILERGVTVPGTDAAVLGAEET
IFTESALVQISGRVGRSINNPTGSIIFFHYGKTNEMIAAKHHILAMNREAAKEDLLKC

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=964774 NSQ41_RS02990 WP_339210955.1 590333..591709(+) (comFA) [Aeribacillus sp. FSL K6-8210]
ATGCATGATCATGATCTTCAAAAACATCTTCTCGGAAGACATCTCCTTTCAAATGAGCTCCCGTTTTCAATGGATGCCGT
TCAAAATGCCCCCTTCGTTGAAATAGAACAAGGTGTTGTGAAAAAATCCGGTTTTTTTTATTGCAATCGATGTGGAAATG
ATCAGCCCTTTTTATTTGCAGGCTTTGACTGTGCAAGGTGTAAAAAGTTTTGTCATTATTGCCGGAACTGTATCATGATG
GGGCGAGTAAGTGAATGCTCAAAGCTTGTTAGTTTTCCAAGACGAGAGAAGGAGGAAAAACATTCGATCCAATCGGATCA
AACAAACTTTTTGCAATGGGATGGCGAGCTGTCCCCGGCGCAAAAAAGAGCATCTGACCGGGTCACGGAGTCCGTTTTGC
AGCGTACAGACTGTCTCATTTGGGCAGTTTGCGGAGCAGGAAAAACAGAGGTGCTGTTTGCCGGCATAAACACAGCTTTG
CAGAAAGGGCTATTTGTTTGCATTGCTGCACCGCGTACGGATGTTGTTTTGGAGCTTGGACCGCGTTTGAAAAACGTTTT
TCCGAGCATCGATGTGGCAGTGCTTTACGGAGGAAGCGAAGATCGTTTGAAGCTGAGCCCAATTACCATTTCAACGACTC
ATCAGCTTCTTCGGTATAAAGAAGCCTTTGACGTGGTGATTCTTGACGAAGTGGATGCTTTTCCATATTCTGTAGATTCT
GCTTTGCAATTTGCGGTTGAAAAAGCACGCAAACGAAACAGCTCCCTTATTTATTTAACTGCGACTCCCTCCTCATCAAT
TAAGCGGCTTTTTAAGCCTTCCGAAATTGTGAAAATCCCTGCTCGATACCATGGTTATCCCCTACCTGTTCCTGAATTCA
AATGGTGCGGCAATTGGAAAAAAAGATTGGAGAAAGGAAAGCTGCCGAAAAATATCATCACATGGGCAGCCGAACAAATG
CAAAAGGAAAGACAAGCTTTTCTATTTGTACCGGAAATCAAAGTGCTTCATGATGTCGTTCCGTTACTAAAAAAATTGAA
TTCAGCGGTTGAAGGAGTACATGCCGAAGATCCCCAAAGGAAAGAAAAGGTTCGGGCATTTCGAAATGGCCGGATTCCGA
TCATTGTCACAACTACCATTTTGGAAAGGGGTGTAACAGTTCCTGGAACTGATGCAGCTGTTTTAGGAGCAGAAGAAACC
ATTTTTACAGAAAGTGCCCTTGTTCAAATATCCGGCCGTGTTGGACGGAGCATAAACAATCCAACAGGCTCCATTATCTT
TTTCCATTATGGCAAAACAAATGAAATGATTGCAGCGAAACACCATATTCTTGCTATGAATCGGGAAGCGGCAAAGGAAG
ATTTGTTAAAGTGTTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-416)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.669

98.908

0.491

Multiple sequence alignment