Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACI6TB_RS03145 Genome accession   NZ_CP174270
Coordinates   651226..653418 (-) Length   730 a.a.
NCBI ID   WP_406812528.1    Uniprot ID   -
Organism   Histophilus somni strain HSNMG-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 646226..658418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6TB_RS03125 (ACI6TB_03125) - 647774..648829 (+) 1056 WP_011609282.1 rod shape-determining protein -
  ACI6TB_RS03130 (ACI6TB_03130) mreC 648911..649966 (+) 1056 WP_406812526.1 rod shape-determining protein MreC -
  ACI6TB_RS03135 (ACI6TB_03135) mreD 649966..650454 (+) 489 WP_011609280.1 rod shape-determining protein MreD -
  ACI6TB_RS03140 (ACI6TB_03140) - 650480..651154 (-) 675 WP_406812527.1 SPOR domain-containing protein -
  ACI6TB_RS03145 (ACI6TB_03145) priA 651226..653418 (-) 2193 WP_406812528.1 primosomal protein N' Machinery gene
  ACI6TB_RS03150 (ACI6TB_03150) mazG 653423..654232 (-) 810 WP_406812529.1 nucleoside triphosphate pyrophosphohydrolase -
  ACI6TB_RS03155 (ACI6TB_03155) - 654745..655752 (+) 1008 WP_406812530.1 aKG-HExxH-type peptide beta-hydroxylase -
  ACI6TB_RS03160 (ACI6TB_03160) - 655736..656137 (+) 402 WP_012340246.1 carboxymuconolactone decarboxylase family protein -
  ACI6TB_RS03165 (ACI6TB_03165) - 656127..657356 (+) 1230 WP_147590378.1 MFS transporter -
  ACI6TB_RS03170 (ACI6TB_03170) - 657419..657532 (-) 114 Protein_606 nucleoside triphosphate pyrophosphohydrolase -
  ACI6TB_RS03175 (ACI6TB_03175) uspA 657701..658126 (+) 426 WP_011609276.1 universal stress protein UspA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 83656.35 Da        Isoelectric Point: 9.7946

>NTDB_id=964761 ACI6TB_RS03145 WP_406812528.1 651226..653418(-) (priA) [Histophilus somni strain HSNMG-1]
MKLARVALAVPLFSFFDYLIPNALSTAVGCRVLVPFGRQKLIGIVTELPEKTEIDISQLKPIISVLDHHSVFTPELWRLL
HWGADYYQFPLGEVLISSLPSKLRRGESAVEKSTFFFQLTEQGQQALDNNKLKRAKKQLEALHYLQKNITEKNNNPFHNQ
VWSTLKSKGYISEQEIHKTSISWQQKLNHQSIVKTNDRLPLNQEQALVLSQLTFQSGFICWLLEGVTGSGKTEIYLQFIE
EILQQEKQILVLVSEIGLTPQTVQRFQARFNIEIDVLHSNLNDNQRLKVWQRSKNGESAVIIGTRSALFTPFKQLGLIIV
DEEHDLSFKQQDNWRYHARDLAVVYAKQLDIPIVLGSATPSLESINNVRQGKYRHITLKKRARNTTALRHSVIDLKRQIV
HNGLSETLLTMMKNHLKKGNQVLLFLNRRGFAPVLLCHECGWIVECQHCEKPYTYHQHQRVLRCHHCGTQKPIPMQCVNC
GSTHLVTTGLGTEQLEESLNQRFPNYKITRIDRDSTARKGKLEQYLRDIQLGKSQILIGTQMLAKGHHFPNVTLVALLNV
DSALFSTDFRAEERLAQLYVQVAGRAGREEKQGEVVLQTHYPEHPLLVSLLSQGYPYFAQQALTLRNQMGLPPFSAQALF
KAQSRHSQKAEEVLHQIAAYFHNTSSKNLQILGPIQAPFSKKAGQYRWHLLLQHKSKAELQQILHSFQQENFLRLQQVRL
VLDIDPLDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=964761 ACI6TB_RS03145 WP_406812528.1 651226..653418(-) (priA) [Histophilus somni strain HSNMG-1]
ATGAAACTTGCACGAGTTGCTCTTGCCGTTCCTCTGTTTAGTTTTTTTGATTATCTTATTCCAAATGCCCTTTCAACCGC
TGTCGGCTGTCGAGTATTAGTCCCTTTCGGACGACAAAAATTAATTGGTATTGTCACTGAGTTACCTGAAAAAACGGAGA
TAGATATTTCACAACTCAAACCCATTATCTCCGTTCTTGATCATCATTCTGTTTTTACCCCTGAATTATGGCGTCTACTA
CATTGGGGAGCGGACTATTATCAATTTCCCTTAGGAGAAGTATTAATAAGCAGCTTGCCAAGCAAATTACGCCGTGGTGA
AAGTGCAGTAGAAAAATCAACATTTTTCTTTCAACTAACGGAACAGGGGCAACAAGCATTAGACAACAACAAGTTAAAAA
GAGCAAAAAAACAGCTTGAGGCTCTACATTATCTACAAAAAAATATCACAGAAAAAAATAACAATCCTTTTCATAACCAA
GTTTGGAGCACCTTAAAAAGTAAGGGGTATATATCTGAACAAGAAATACATAAAACAAGTATCTCTTGGCAACAAAAATT
AAATCATCAATCTATTGTAAAAACTAACGATCGCCTTCCCCTTAACCAAGAGCAAGCTCTTGTACTCAGCCAATTAACCT
TTCAATCCGGATTTATCTGTTGGTTATTAGAAGGCGTAACCGGTTCAGGAAAAACAGAAATCTATCTTCAATTTATTGAG
GAAATTTTACAACAAGAGAAACAAATTTTAGTACTGGTATCGGAAATTGGTCTCACGCCACAAACAGTACAACGCTTTCA
AGCGAGATTTAATATTGAAATTGATGTGTTACATTCAAATTTAAATGATAACCAACGTTTGAAAGTATGGCAACGTTCTA
AAAATGGCGAAAGTGCGGTCATCATCGGCACGAGATCAGCACTATTTACTCCCTTTAAACAACTGGGGCTAATTATCGTT
GATGAAGAACATGATCTTTCATTTAAACAACAAGATAACTGGCGTTATCATGCTCGTGATCTTGCAGTAGTTTACGCTAA
ACAATTGGATATTCCTATCGTGTTAGGATCTGCAACGCCAAGTTTGGAAAGCATCAATAATGTGCGACAAGGCAAATATC
GTCACATCACACTCAAAAAAAGAGCAAGAAATACTACCGCACTTCGTCATTCGGTTATCGACCTAAAGCGACAAATAGTA
CATAACGGTTTATCTGAAACCTTGTTGACAATGATGAAAAATCACTTAAAAAAGGGAAATCAGGTTTTATTGTTCTTAAA
CCGCCGTGGTTTCGCACCTGTTCTACTTTGTCATGAATGTGGCTGGATTGTAGAATGCCAACATTGTGAAAAGCCTTATA
CTTATCATCAACATCAGCGAGTTCTACGTTGCCACCATTGCGGAACACAAAAACCTATTCCAATGCAATGTGTAAATTGC
GGTTCGACACATTTAGTGACGACAGGTTTAGGAACAGAACAATTGGAAGAAAGTTTAAACCAACGTTTTCCAAACTATAA
GATTACCCGTATTGACAGAGATAGTACCGCTCGCAAAGGAAAATTGGAACAATATCTACGGGATATTCAATTAGGCAAAA
GCCAAATTTTAATTGGTACACAAATGCTAGCCAAAGGGCATCATTTCCCCAATGTAACTTTAGTGGCACTGTTAAACGTG
GATAGTGCACTTTTTTCTACTGATTTTCGGGCAGAAGAACGTTTAGCCCAACTTTATGTTCAAGTTGCAGGACGAGCCGG
ACGAGAAGAAAAACAAGGAGAGGTCGTCTTGCAAACCCACTATCCGGAACATCCTTTATTGGTTAGTTTATTAAGTCAAG
GTTATCCTTACTTTGCCCAACAAGCCCTCACTTTGCGTAACCAAATGGGGTTACCGCCTTTCAGTGCTCAAGCACTGTTT
AAAGCCCAAAGTCGCCACTCACAAAAAGCTGAGGAAGTGTTACACCAAATTGCCGCCTATTTTCATAATACCTCAAGCAA
AAACTTGCAAATCTTGGGGCCTATCCAAGCACCTTTTAGCAAAAAAGCGGGGCAATATCGCTGGCACCTTTTATTACAAC
ATAAATCCAAAGCAGAATTACAACAAATTTTACACTCTTTTCAGCAAGAAAATTTTTTAAGATTACAACAAGTGCGGTTA
GTTTTAGATATAGATCCGCTGGATTTGAGCTAG

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)

Helicase conserved C-terminal domain (Helicase_C)

(494-588)

DEAD/DEAH box helicase (DEAD)

(222-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.915

100

0.436