Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   NSS67_RS27885 Genome accession   NZ_CP150170
Coordinates   6448860..6449807 (-) Length   315 a.a.
NCBI ID   WP_339316989.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2734     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 6443860..6454807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS67_RS27860 (NSS67_27860) - 6444165..6445358 (-) 1194 WP_339316984.1 anti-sigma factor -
  NSS67_RS27865 (NSS67_27865) - 6445351..6445854 (-) 504 WP_339316985.1 sigma-70 family RNA polymerase sigma factor -
  NSS67_RS27870 (NSS67_27870) - 6446040..6447041 (-) 1002 WP_339316986.1 siderophore ABC transporter substrate-binding protein -
  NSS67_RS27875 (NSS67_27875) - 6447164..6447919 (-) 756 WP_339316987.1 ABC transporter ATP-binding protein -
  NSS67_RS27880 (NSS67_27880) - 6447913..6448857 (-) 945 WP_339316988.1 iron chelate uptake ABC transporter family permease subunit -
  NSS67_RS27885 (NSS67_27885) ceuB 6448860..6449807 (-) 948 WP_339316989.1 ABC transporter permease Machinery gene
  NSS67_RS27890 (NSS67_27890) - 6450055..6450315 (-) 261 WP_339316990.1 YqkE family protein -
  NSS67_RS27895 (NSS67_27895) - 6450407..6450751 (+) 345 WP_339316991.1 winged helix-turn-helix transcriptional regulator -
  NSS67_RS27900 (NSS67_27900) - 6450776..6451279 (-) 504 WP_339316993.1 N-acetyltransferase family protein -
  NSS67_RS27905 (NSS67_27905) - 6451305..6452147 (-) 843 WP_339316994.1 SDR family oxidoreductase -
  NSS67_RS27910 (NSS67_27910) - 6452405..6453499 (+) 1095 WP_339316995.1 Xaa-Pro peptidase family protein -
  NSS67_RS27915 (NSS67_27915) - 6453556..6454521 (-) 966 WP_339320722.1 nitronate monooxygenase family protein -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34483.70 Da        Isoelectric Point: 10.0384

>NTDB_id=964726 NSS67_RS27885 WP_339316989.1 6448860..6449807(-) (ceuB) [Paenibacillus sp. FSL R10-2734]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFSLTESQIQTLLVSRIPRLAALIIAGISMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMKILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLV
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYVFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKNLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=964726 NSS67_RS27885 WP_339316989.1 6448860..6449807(-) (ceuB) [Paenibacillus sp. FSL R10-2734]
ATGAAACTAAAATATTTGTCCCTACTTCTAATCGTATTCTCATTTATATCTTTGTTTATAGGCGTAAAAGACATTTCACC
TCTGGATCTTTTTTCGCTAACGGAATCTCAGATTCAGACCCTGCTAGTCAGTCGAATCCCACGCTTAGCAGCACTGATTA
TAGCTGGTATAAGCATGAGTATTGCCGGATTAATTATGCAGCAGCTATCGCGCAATAAATTCGTCTCACCGACTACGGCG
GGCACGATGGATTCGGCGAAATTCGGTATTCTCGTATCTCTGATGCTGTTCACCGGGGCAACGCCGATGCAGAAGCTGCT
CGTTGCTTTTGTCTTCGCATTGTTGGGAACCTTTATATTCATGAAAATCTTGGATCGGATCAAGTTCAAGGATAGTATTT
TCATCCCATTAGTCGGACTCATGTTCGGGAACATTGTAGGCTCGATTACGACTTTTTTTGCTTACAAAAATGATTTGGTG
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATTAAAGGTCAATACGAATTAATCTATATCAGTATTCC
ACTTGTCATTCTCGCGTATGTTTTCGCCAATAAGTTCACTGTTGCCGGTATGGGGGAGGATTTCTCCGTCAATCTCGGTA
TGAACTACAAAGCGGTTGTGAACGTAGGATTGGTGATTGTAGCGTTAATCTCTTCTGTTGTTATTTTAACCGTAGGTACG
ATCCCATTCCTAGGTCTTGTTGTACCTAACATAGTAACGCTATACATAGGCGATAACCTCAAAAAAAATCTGGCGCATAC
TGCCATTCTCGGTGCGGTGTTCCTCCTGTTCTGTGATATTTTGGGCAGGCTCATTATATATCCGTACGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGAAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAATTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559


Multiple sequence alignment