Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSS67_RS10585 Genome accession   NZ_CP150170
Coordinates   2396555..2396986 (-) Length   143 a.a.
NCBI ID   WP_339320568.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2734     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2391555..2401986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS67_RS10540 (NSS67_10540) - 2391635..2392084 (+) 450 WP_339319478.1 hypothetical protein -
  NSS67_RS10545 (NSS67_10545) - 2392399..2393391 (-) 993 WP_339319479.1 hypothetical protein -
  NSS67_RS10550 (NSS67_10550) - 2393388..2393882 (-) 495 WP_339319480.1 sigma-70 family RNA polymerase sigma factor -
  NSS67_RS10555 (NSS67_10555) - 2394332..2394664 (-) 333 WP_339319481.1 DUF3139 domain-containing protein -
  NSS67_RS10560 (NSS67_10560) - 2394770..2394943 (+) 174 WP_339319482.1 hypothetical protein -
  NSS67_RS10565 (NSS67_10565) - 2395077..2395235 (-) 159 WP_339319483.1 hypothetical protein -
  NSS67_RS10570 (NSS67_10570) - 2395315..2395848 (-) 534 WP_339320567.1 ImmA/IrrE family metallo-endopeptidase -
  NSS67_RS10575 (NSS67_10575) - 2396001..2396177 (-) 177 WP_339319484.1 YjfB family protein -
  NSS67_RS10580 (NSS67_10580) - 2396327..2396473 (+) 147 WP_156113170.1 hypothetical protein -
  NSS67_RS10585 (NSS67_10585) nucA/comI 2396555..2396986 (-) 432 WP_339320568.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSS67_RS10590 (NSS67_10590) - 2397093..2397509 (+) 417 WP_339319485.1 cytidine deaminase -
  NSS67_RS10595 (NSS67_10595) - 2397681..2399150 (+) 1470 WP_339319486.1 glycosyl hydrolase -
  NSS67_RS10600 (NSS67_10600) - 2399227..2399715 (-) 489 WP_339319487.1 PH domain-containing protein -
  NSS67_RS10605 (NSS67_10605) - 2399833..2400393 (+) 561 WP_339319488.1 hypothetical protein -
  NSS67_RS10610 (NSS67_10610) - 2400736..2401071 (+) 336 WP_339319489.1 YolD-like family protein -
  NSS67_RS10615 (NSS67_10615) - 2401068..2401232 (-) 165 WP_339319490.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15851.66 Da        Isoelectric Point: 4.2779

>NTDB_id=964717 NSS67_RS10585 WP_339320568.1 2396555..2396986(-) (nucA/comI) [Paenibacillus sp. FSL R10-2734]
MQKLITSLIIVVLLALGGYWFEQNGDPAAPSSTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCDEGGEGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=964717 NSS67_RS10585 WP_339320568.1 2396555..2396986(-) (nucA/comI) [Paenibacillus sp. FSL R10-2734]
ATACAGAAACTTATCACCAGTCTCATCATTGTTGTGTTACTTGCTTTAGGCGGTTACTGGTTTGAACAGAACGGAGACCC
GGCAGCCCCCTCGTCTACATCCGATTCAGAAGTTGTTCAGTTGATCTTCCCATCGGATCGTTATCCTGAGACGGCCAAGC
ATATTCAGGACGCGATTGCCAAAGGGGAATCCGCTACGTGCACCATTAACCGTGAGCAGGCTGAAGAGAACCGCAAAGAA
TCCTTAAAAGGGATCCCCACCAAAAAAGGGTACGACCGCGATGAATGGCCAATGGCCATGTGTGATGAAGGCGGCGAAGG
GGCCGACATTGAATACATAACGCCAAAAGATAACCGCGGCGCAGGAAGCTGGGTTGGCAATCAGCTAGAAGATTATGCGG
ATGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

72.028

0.503

Multiple sequence alignment