Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NSS67_RS07160 Genome accession   NZ_CP150170
Coordinates   1592222..1593985 (-) Length   587 a.a.
NCBI ID   WP_339318909.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2734     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587222..1598985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS67_RS07145 (NSS67_07145) - 1587564..1588985 (+) 1422 WP_339320523.1 M20 family metallopeptidase -
  NSS67_RS07150 (NSS67_07150) - 1588982..1590289 (+) 1308 WP_339318907.1 ArsR family transcriptional regulator -
  NSS67_RS07155 (NSS67_07155) - 1590539..1591492 (+) 954 WP_339318908.1 DMT family transporter -
  NSS67_RS07160 (NSS67_07160) rcrQ 1592222..1593985 (-) 1764 WP_339318909.1 ABC transporter ATP-binding protein Regulator
  NSS67_RS07165 (NSS67_07165) rcrP 1593985..1595742 (-) 1758 WP_339318910.1 ABC transporter ATP-binding protein Regulator
  NSS67_RS07170 (NSS67_07170) - 1595905..1596396 (-) 492 WP_339318911.1 GNAT family N-acetyltransferase -
  NSS67_RS07175 (NSS67_07175) - 1596393..1597472 (-) 1080 WP_339318912.1 HAMP domain-containing sensor histidine kinase -
  NSS67_RS07180 (NSS67_07180) - 1597469..1598140 (-) 672 WP_339318913.1 response regulator transcription factor -
  NSS67_RS07185 (NSS67_07185) - 1598587..1598859 (+) 273 WP_339320524.1 transposase zinc-binding domain-containing protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64139.52 Da        Isoelectric Point: 7.3837

>NTDB_id=964710 NSS67_RS07160 WP_339318909.1 1592222..1593985(-) (rcrQ) [Paenibacillus sp. FSL R10-2734]
MTTKKKKGPNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLFGPDKLSEITDKITAGLAGSIDMDGITTIGITLVVIYGI
GALLSLSQGLIMSIITQKVSKKLRTDLAHKMNKLPISYYNKSATGDILSRVTNDVDTIGQAMNQSVGNVVTAVAMFIGSI
IMMLKTNVIMTLTAIVATIIGFGLMAVIMKKSQKYFASQQEFLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGL
KNSAFKAQFLSGLMPPLMGFIGNLGFVAVCIVGGVLAMNGTISFGVIVAFIMYVRFFTQPLAQIAQAAQSLQSASAAGGR
VFEFLEEEEMEDESRKENTLPTAKGKVKFDQVQFAYETSEKLIINNFSTDVKPGQKVAIVGPTGAGKTTLVNLLIRFNEL
TGGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIKENLIYNQQNITDEKLIEACKSVGLHRFIKSLSDGYNTVLND
KVNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDIL
ESGSHAELLAQNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=964710 NSS67_RS07160 WP_339318909.1 1592222..1593985(-) (rcrQ) [Paenibacillus sp. FSL R10-2734]
ATGACAACCAAGAAGAAAAAAGGTCCAAACACATGGAGCAAGCTGCTCCGCTACTGCCGCAAATATGTTCCAGTAATCGT
CATTGCGCTAATCTGCGCGGCGGCTGGAACAGTGCTCACATTATTCGGTCCGGATAAACTCTCCGAGATCACCGACAAAA
TTACAGCTGGTCTCGCTGGCAGCATCGATATGGACGGCATTACTACGATTGGCATTACACTCGTCGTAATCTACGGCATC
GGTGCGCTGCTGTCACTCTCGCAAGGCTTGATTATGTCGATTATTACCCAGAAGGTCTCGAAGAAATTAAGAACTGATTT
GGCTCATAAAATGAACAAACTACCGATCTCCTACTATAATAAATCGGCCACAGGTGATATTTTATCACGGGTAACGAATG
ATGTAGATACCATCGGGCAGGCGATGAATCAGAGTGTTGGTAATGTCGTGACTGCCGTAGCCATGTTCATTGGTTCGATT
ATCATGATGCTGAAGACCAATGTAATTATGACCCTTACCGCTATCGTCGCTACAATTATCGGCTTTGGTCTTATGGCTGT
CATTATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAATTTTTAGGTAAAATTAACGGTCATGTTGAAGAAGTCT
ACACAGGACATAACGTTGTAAAAGCATATAACGGGGAAGCCCAAATGCGCACCACCTTCCAGGAATTGAATCAGGGACTG
AAGAACAGCGCCTTCAAAGCGCAATTCCTCTCTGGGCTGATGCCACCGCTGATGGGCTTTATAGGTAATCTAGGCTTCGT
CGCCGTCTGTATCGTTGGTGGTGTACTCGCCATGAATGGCACGATTTCATTCGGAGTTATCGTTGCCTTCATTATGTATG
TACGTTTCTTCACCCAGCCGTTGGCCCAGATTGCCCAGGCCGCACAGAGTCTGCAATCGGCATCTGCCGCAGGTGGACGC
GTGTTCGAATTCCTAGAGGAAGAGGAAATGGAAGACGAGAGCCGCAAAGAGAACACATTGCCAACTGCTAAAGGCAAAGT
GAAATTTGACCAAGTACAATTTGCGTATGAGACATCAGAAAAACTGATTATCAATAACTTCTCAACAGATGTAAAACCTG
GGCAAAAAGTGGCCATCGTTGGTCCTACCGGCGCAGGCAAAACTACGCTGGTCAATCTGCTTATCCGGTTCAACGAATTG
ACGGGCGGAGAAATCTACATTGATGACACGCCGATCAGTAGCCTGACGAGAGAGAACATTCATGATCTGTTCTGTATGGT
CCTGCAGGATACCTGGCTGTTTGAGGGTACGATTAAAGAGAATCTGATTTACAATCAGCAGAATATTACAGACGAGAAGC
TTATAGAGGCTTGCAAGTCCGTTGGCCTGCACCGCTTCATTAAATCCTTAAGTGACGGATACAACACCGTCCTGAACGAT
AAGGTTAATCTGTCCGCCGGACAAAAGCAGCAGCTGACCATCGCTCGCGCGATGCTGAAGGATGCGCCAATGCTCATTCT
TGATGAAGCTACAAGCTCGGTGGATACCCGTACAGAATTGCTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGCAGAA
CGTCTTTCGTTATCGCACACCGACTCTCCACGATCAAGAATGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATCCTG
GAAAGCGGCAGCCACGCGGAATTGCTGGCTCAGAACGGATTCTATGCAGAACTGTACAATAGCCAGTTTGAGCAAGCTTC
TTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-301)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.607

99.659

0.574

Multiple sequence alignment