Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST31_RS20420 Genome accession   NZ_CP150169
Coordinates   4344531..4346204 (+) Length   557 a.a.
NCBI ID   WP_339162934.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4339531..4351204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS20400 (NST31_20400) - 4340615..4341220 (+) 606 WP_077111339.1 hypothetical protein -
  NST31_RS20405 (NST31_20405) dxs 4341236..4343128 (+) 1893 WP_077111338.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST31_RS20410 (NST31_20410) - 4343132..4343959 (+) 828 WP_077111336.1 TlyA family RNA methyltransferase -
  NST31_RS20415 (NST31_20415) argR 4344068..4344517 (+) 450 WP_077111335.1 transcriptional regulator ArgR -
  NST31_RS20420 (NST31_20420) recN 4344531..4346204 (+) 1674 WP_339162934.1 DNA repair protein RecN Machinery gene
  NST31_RS20425 (NST31_20425) spoIVB 4346326..4347618 (+) 1293 WP_077111394.1 SpoIVB peptidase -
  NST31_RS20430 (NST31_20430) spo0A 4347887..4348675 (+) 789 WP_077111333.1 sporulation transcription factor Spo0A -
  NST31_RS20435 (NST31_20435) - 4348740..4349471 (+) 732 WP_077111331.1 glycerophosphodiester phosphodiesterase -
  NST31_RS20440 (NST31_20440) - 4349526..4349762 (-) 237 WP_077111330.1 DUF2627 domain-containing protein -
  NST31_RS20445 (NST31_20445) - 4349935..4351032 (+) 1098 WP_077111329.1 Glu/Leu/Phe/Val dehydrogenase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 63700.31 Da        Isoelectric Point: 6.7195

>NTDB_id=964688 NST31_RS20420 WP_339162934.1 4344531..4346204(+) (recN) [Siminovitchia sp. FSL W7-1587]
MLQELSIRNFAIIDKISISFSEGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFVRHGEKKAEIEGLFFIHDEHSCIKKA
SEYGIDVEEGMVVLRREISNTGKSVCRVNGKLVTIATMREIGSSLIDIHGQHEHQELMNDALHVLLLDQYGKKEIVPARE
RYTNVYEKYLEVQNKIKELSKTEQQMAHRLDLLQFQMREIEKANLKMNEDDLLEEERKRLVNFEKLFGSLKDGYEQLQGD
QRGLDSIGRAMSMLETAAEVDSKYQSIKESVSNSYYMLEDAVLTIRTELDMLEYDPMRLNEIESRLNEINQLKRKYGYTV
EQILDYYEKIKEEAESILNKESRLEELQKQLDKLKKQLMDIGNHLTKIRKKWANKLTNAIHRELKELYMDKTVFEVTFNE
QLPSGNGLDNIQFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSTRVTSVIFDEVDTGVSGRVAQAMAEKMYKISVN
SQVLCISHLPQVAAMADHHMLIAKEIIHKRTRTTIKNLTEKEKIKEIGRMISGTEITDITKRHAKELLQSAYTIKKP

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=964688 NST31_RS20420 WP_339162934.1 4344531..4346204(+) (recN) [Siminovitchia sp. FSL W7-1587]
TTGTTACAGGAATTGTCGATTAGAAACTTTGCCATCATTGATAAAATATCGATTTCTTTTTCGGAAGGGTTAACTGTCTT
AACCGGAGAAACGGGGGCAGGAAAATCGATTATTATTGATGCGGTCCATTTATTGGTTGGCGGGCGGGGATCAGCGGAGT
TTGTGCGGCATGGTGAAAAAAAAGCGGAAATAGAAGGCTTGTTTTTTATACATGATGAACATTCCTGTATTAAAAAAGCG
TCTGAATATGGAATTGATGTAGAAGAAGGAATGGTCGTTTTGCGCCGGGAGATTTCAAACACCGGTAAAAGCGTTTGCCG
GGTGAATGGAAAGCTCGTCACGATCGCTACAATGCGTGAGATCGGCAGCTCGCTCATCGATATCCATGGACAGCATGAGC
ATCAGGAATTAATGAATGATGCCTTACATGTATTGCTTTTGGATCAATATGGAAAAAAAGAAATCGTTCCTGCCCGGGAG
CGTTACACAAATGTTTATGAAAAATACTTGGAAGTACAAAATAAAATCAAAGAGCTAAGCAAAACGGAGCAGCAAATGGC
CCATCGTCTCGATTTACTGCAATTTCAAATGCGGGAAATTGAAAAGGCAAACCTTAAAATGAATGAAGATGACCTGCTTG
AAGAAGAAAGAAAGCGGCTCGTTAATTTCGAAAAATTGTTTGGCTCTTTAAAAGACGGATACGAACAGCTTCAGGGAGAT
CAACGCGGCCTTGACTCTATAGGCCGTGCTATGAGCATGCTGGAAACAGCGGCTGAAGTTGACAGCAAATACCAATCCAT
CAAAGAGTCAGTGTCGAACAGTTATTATATGTTGGAAGATGCTGTTTTAACCATTAGAACTGAGCTTGATATGCTTGAAT
ACGATCCAATGCGATTAAATGAAATTGAGTCGCGCTTGAATGAAATCAACCAGTTAAAAAGGAAATACGGTTATACAGTA
GAACAAATTTTGGATTATTATGAGAAGATTAAGGAAGAAGCCGAATCGATTCTCAATAAGGAAAGCCGCCTCGAAGAGTT
ACAAAAGCAGCTGGACAAGTTGAAAAAACAACTGATGGATATAGGCAATCATTTGACTAAAATCCGGAAAAAATGGGCAA
ACAAATTAACAAATGCCATTCATCGAGAATTAAAAGAACTGTACATGGACAAGACCGTTTTTGAGGTTACTTTTAACGAA
CAGCTCCCAAGTGGAAACGGGTTGGACAACATTCAATTTTACATTTCAACCAACCCCGGAGAGCCGTTAAAGCCTTTGTC
CAAAGTCGCTTCCGGTGGAGAACTGTCGCGCATTATGCTGGCGCTCAAGACGATATTTTCGACAAGAGTCACTTCCGTCA
TATTCGATGAAGTGGATACGGGTGTAAGTGGCCGGGTCGCGCAAGCAATGGCAGAGAAAATGTACAAAATATCCGTTAAT
TCCCAAGTCCTTTGTATTTCCCATTTACCGCAAGTTGCTGCAATGGCGGATCATCATATGCTTATTGCCAAAGAGATCAT
TCATAAAAGAACACGAACAACGATTAAAAACTTGACTGAAAAAGAAAAAATAAAAGAAATTGGCCGCATGATTTCTGGAA
CCGAGATAACTGACATTACAAAAAGGCATGCCAAAGAATTGCTTCAATCTGCCTATACCATAAAAAAGCCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.592

100

0.592

Multiple sequence alignment