Detailed information NTG0964684

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI77R_RS09590
• Genome accession: NZ_CP174268
• Coordinates: 1909433..1910425 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli isolate RiboJ-M2-day21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1904433..1915425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI77R_RS09570 (ACI77R_09570)	otnK	1905209..1906375 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACI77R_RS09575 (ACI77R_09575)	ygbL	1906467..1907105 (+)	639	WP_001278994.1	aldolase	-
ACI77R_RS09580 (ACI77R_09580)	ygbM	1907110..1907886 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACI77R_RS09585 (ACI77R_09585)	ygbN	1907975..1909339 (+)	1365	WP_000104441.1	GntP family transporter	-
ACI77R_RS09590 (ACI77R_09590)	rpoS	1909433..1910425 (-)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
ACI77R_RS09595 (ACI77R_09595)	nlpD	1910488..1911582 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI77R_RS09600 (ACI77R_09600)	pcm	1911767..1912393 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI77R_RS09605 (ACI77R_09605)	surE	1912387..1913148 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI77R_RS09610 (ACI77R_09610)	truD	1913129..1914178 (-)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
ACI77R_RS09615 (ACI77R_09615)	ispF	1914175..1914654 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI77R_RS09620 (ACI77R_09620)	ispD	1914654..1915364 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=964684 ACI77R_RS09590 WP_000081586.1 1909433..1910425(-) (rpoS) [Escherichia coli isolate RiboJ-M2-day21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=964684 ACI77R_RS09590 WP_000081586.1 1909433..1910425(-) (rpoS) [Escherichia coli isolate RiboJ-M2-day21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715