Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAA995_RS02830 Genome accession   NZ_AP028877
Coordinates   545524..545790 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21P20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 540524..550790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA995_RS02810 (SP21P20_05540) - 540674..541183 (+) 510 WP_000619941.1 N-acetyltransferase -
  AAA995_RS02815 (SP21P20_05550) pheT 541260..543665 (+) 2406 WP_000961595.1 phenylalanine--tRNA ligase subunit beta -
  AAA995_RS02820 (SP21P20_05560) - 543838..544839 (-) 1002 WP_000597995.1 endonuclease/exonuclease/phosphatase family protein -
  AAA995_RS02825 - 544995..545398 (+) 404 Protein_556 helix-turn-helix domain-containing protein -
  AAA995_RS02830 (SP21P20_05580) HI0659 545524..545790 (+) 267 WP_001810535.1 helix-turn-helix transcriptional regulator Machinery gene
  AAA995_RS02835 (SP21P20_05590) metE 546051..548300 (+) 2250 WP_000108213.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAA995_RS02840 (SP21P20_05600) metF 548364..549230 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=96467 AAA995_RS02830 WP_001810535.1 545524..545790(+) (HI0659) [Streptococcus pneumoniae strain 21P20]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=96467 AAA995_RS02830 WP_001810535.1 545524..545790(+) (HI0659) [Streptococcus pneumoniae strain 21P20]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment