Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NST31_RS10735 Genome accession   NZ_CP150169
Coordinates   2282794..2284173 (-) Length   459 a.a.
NCBI ID   WP_077111519.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2277794..2289173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS10715 (NST31_10715) gltX 2278746..2280203 (-) 1458 WP_077111523.1 glutamate--tRNA ligase -
  NST31_RS10720 (NST31_10720) ispF 2280300..2280779 (-) 480 WP_077111522.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NST31_RS10725 (NST31_10725) ispD 2280792..2281484 (-) 693 WP_077111521.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NST31_RS10730 (NST31_10730) - 2281502..2282599 (-) 1098 WP_339160572.1 PIN/TRAM domain-containing protein -
  NST31_RS10735 (NST31_10735) radA 2282794..2284173 (-) 1380 WP_077111519.1 DNA repair protein RadA Machinery gene
  NST31_RS10740 (NST31_10740) clpC 2284242..2286677 (-) 2436 WP_077111518.1 ATP-dependent protease ATP-binding subunit ClpC -
  NST31_RS10745 (NST31_10745) - 2286679..2287761 (-) 1083 WP_077111517.1 protein arginine kinase -
  NST31_RS10750 (NST31_10750) - 2287758..2288303 (-) 546 WP_077111516.1 UvrB/UvrC motif-containing protein -
  NST31_RS10755 (NST31_10755) - 2288325..2288786 (-) 462 WP_077111605.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50096.52 Da        Isoelectric Point: 7.4602

>NTDB_id=964662 NST31_RS10735 WP_077111519.1 2282794..2284173(-) (radA) [Siminovitchia sp. FSL W7-1587]
MAKRKTKFMCQSCGYESPKWMGRCPGCGEWNQMVEEVNITGKTRRGALHHTASDTTSQPSPITSIQTDIEPRVETKSTEF
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQTSSQLAELNKKVLYISGEESVKQTKLRANRLHVTSSELYLFAETNLELIH
QTILNLSPDFVVVDSIQTVYHPEVTSAPGSVSQVRECTGELMKIAKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMKESGLEQVENPSEIFLEERSKGASGSTVVASMEGTRPVLVEVQALISPTSY
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDQPTRPADCLIGEVGLT
GEVRRVSRIEQRVQEAAKLGFTRILVPAKNIGGWKVPEGIRLIGVDTVEEALQQAFLPS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=964662 NST31_RS10735 WP_077111519.1 2282794..2284173(-) (radA) [Siminovitchia sp. FSL W7-1587]
ATGGCGAAAAGAAAAACAAAGTTCATGTGCCAAAGTTGCGGCTATGAATCACCAAAATGGATGGGCCGCTGCCCAGGCTG
TGGCGAGTGGAACCAAATGGTGGAAGAAGTCAATATAACCGGAAAAACGAGACGGGGAGCACTCCATCATACTGCCTCGG
ATACGACTTCTCAACCTTCGCCTATTACCTCCATTCAAACAGACATAGAGCCCCGCGTTGAGACAAAGTCAACAGAATTC
AACCGCGTTTTGGGCGGAGGTGTCGTTCCCGGCTCGCTCGTCCTGATCGGGGGAGATCCAGGAATTGGCAAATCGACCCT
TCTGCTCCAAACTTCTTCCCAACTGGCTGAATTGAATAAAAAAGTTCTATATATATCCGGAGAGGAATCGGTGAAACAAA
CAAAATTGCGAGCCAACCGGCTACATGTCACTTCATCAGAGCTTTACCTTTTTGCTGAAACGAATTTGGAGTTGATTCAT
CAAACCATTTTAAATTTATCTCCAGATTTTGTAGTGGTGGATTCGATTCAAACCGTCTATCATCCTGAAGTAACTTCTGC
ACCAGGCAGCGTTTCGCAAGTCCGTGAGTGTACCGGCGAATTAATGAAAATAGCAAAAACGAAAGGAATCGCGATTTTTA
TCGTTGGACATGTAACGAAAGAAGGAGCGATTGCGGGGCCGCGTCTTTTGGAGCATATGGTTGATACTGTTCTCTATTTT
GAAGGAGAACGCCACCACACATACAGGATTTTGCGGGCCGTCAAAAACAGGTTCGGTTCTACGAATGAAATAGGGATTTT
TGAAATGAAAGAGTCGGGATTAGAGCAAGTGGAAAATCCTTCGGAAATTTTCCTGGAAGAACGTTCAAAAGGAGCATCTG
GTTCAACCGTAGTTGCTTCGATGGAGGGGACAAGGCCTGTCCTTGTAGAGGTTCAAGCCCTGATTTCTCCTACAAGCTAT
GGAAATCCCCGCCGAATGGCAACAGGTATTGACCATAATCGCGTTTCGCTGCTGATGGCCGTTTTGGAAAAGCGGGTAGG
CCTTTTATTGCAAAACCAGGATGCTTATCTCAAAGTGGCTGGAGGAGTAAAACTAGACGAGCCGGCAATTGACCTGGCGG
TAGCGGTTAGTATTGCATCGAGTTTTCGCGATCAGCCTACCAGACCCGCAGATTGCCTGATTGGAGAAGTTGGTTTAACA
GGGGAGGTAAGGCGCGTATCCCGAATTGAGCAGCGGGTACAGGAAGCTGCAAAGCTGGGATTCACCCGGATATTGGTTCC
CGCCAAAAATATCGGAGGCTGGAAGGTTCCGGAAGGGATTCGGCTTATTGGTGTAGATACGGTGGAGGAAGCATTACAGC
AAGCATTTCTACCTTCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.492

99.564

0.752
  radA Streptococcus pneumoniae Rx1

63.676

99.564

0.634
  radA Streptococcus pneumoniae D39

63.676

99.564

0.634
  radA Streptococcus pneumoniae R6

63.676

99.564

0.634
  radA Streptococcus pneumoniae TIGR4

63.676

99.564

0.634
  radA Streptococcus mitis NCTC 12261

63.676

99.564

0.634
  radA Streptococcus mitis SK321

63.676

99.564

0.634

Multiple sequence alignment