Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NST31_RS02815 Genome accession   NZ_CP150169
Coordinates   589087..590907 (-) Length   606 a.a.
NCBI ID   WP_339163758.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 584087..595907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS02795 (NST31_02795) - 584598..585191 (+) 594 WP_339163751.1 CYTH domain-containing protein -
  NST31_RS02800 (NST31_02800) - 585198..585833 (+) 636 WP_339163754.1 lytic transglycosylase domain-containing protein -
  NST31_RS02805 (NST31_02805) - 585962..586363 (+) 402 WP_077110295.1 globin -
  NST31_RS02810 (NST31_02810) - 586363..587193 (+) 831 WP_077110296.1 ClpXP adapter SpxH family protein -
  NST31_RS02815 (NST31_02815) pepF 589087..590907 (-) 1821 WP_339163758.1 oligoendopeptidase F Regulator
  NST31_RS02820 (NST31_02820) - 590974..592320 (-) 1347 WP_339163761.1 competence protein CoiA family protein -
  NST31_RS02825 (NST31_02825) mecA 592625..593284 (-) 660 WP_077112431.1 adaptor protein MecA -
  NST31_RS02830 (NST31_02830) spxA 593992..594387 (-) 396 WP_077112395.1 transcriptional regulator SpxA -
  NST31_RS02835 (NST31_02835) - 594700..595902 (-) 1203 WP_236017177.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69768.45 Da        Isoelectric Point: 5.2537

>NTDB_id=964655 NST31_RS02815 WP_339163758.1 589087..590907(-) (pepF) [Siminovitchia sp. FSL W7-1587]
MTEQNNVKTLPSRSEVSEELTWRLEDIFVTDEEWEKEYAAIQQKMKEAQQFKGKLGESAATLYEALQFQSKLSERMGKLY
TYAHMRNDQDTTNTHYQGMNARAESLYSQLTSAFSYIVPEILNIEKEQLAQFLKEEPALQLYEHALNRINLKRGHVLDAE
QEALLAEASEVMGASSTTFSVLNNADLEFPVIKDEEGNDVQLSHGNYIRFLESRDRSVRKEAFMNVYRTYGKFKNTFAST
LSGSIKQDNFYAKARNYQTARQAALAANNIPEKVYDNLVSTINNNLHLLQRYLKLRKQILGLEQLHMYDLYVPLVKEVDM
KVTYEEAKDILLSGLTPLGKEYVGILQAGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKNQPYPYGNYSIFVAEVASTCNEALLGDYMQKATADKQERLYLINHYLEGFRGTVFRQTMFAEFEHVIHQKAQ
EGTALTADFLTKQYYELNKKYFGEDHIHIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGETAVGRYINF
LKAGNSDYPIEVLKQAGVDMTTTEPIEAACKVFEEKLNEMEQLLMS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=964655 NST31_RS02815 WP_339163758.1 589087..590907(-) (pepF) [Siminovitchia sp. FSL W7-1587]
ATGACAGAGCAGAATAACGTAAAAACTCTTCCAAGCCGATCGGAAGTGTCGGAAGAATTAACATGGAGATTAGAGGATAT
ATTTGTGACGGATGAGGAGTGGGAAAAAGAGTATGCTGCCATCCAGCAAAAGATGAAAGAAGCGCAACAGTTTAAAGGGA
AATTGGGCGAAAGTGCGGCAACATTGTATGAAGCGTTGCAATTTCAATCAAAACTGTCGGAACGAATGGGTAAACTTTAT
ACATATGCTCATATGCGCAACGATCAGGATACGACGAATACACATTATCAAGGGATGAATGCCCGGGCGGAAAGCTTGTA
TTCACAATTAACCAGCGCTTTTTCATATATCGTTCCGGAAATACTCAATATCGAAAAGGAACAGCTTGCGCAATTTTTAA
AAGAAGAACCGGCATTACAATTGTATGAGCATGCGCTAAACCGTATTAACCTGAAGCGCGGGCATGTGTTGGACGCAGAG
CAGGAGGCGCTTCTTGCCGAAGCCTCGGAAGTAATGGGGGCATCAAGCACCACATTCAGCGTGTTAAACAACGCAGACCT
TGAATTCCCGGTCATAAAGGACGAAGAAGGAAATGATGTGCAGCTTTCGCATGGAAATTACATTCGTTTTCTGGAGAGTC
GGGATCGCTCCGTCAGAAAAGAAGCATTTATGAATGTGTACCGCACGTACGGAAAATTTAAGAATACATTTGCCAGTACT
TTAAGCGGTTCTATCAAGCAGGATAATTTTTATGCCAAAGCGAGAAATTATCAAACGGCAAGGCAGGCAGCTTTGGCAGC
CAACAACATTCCTGAAAAAGTATATGACAATCTTGTATCAACGATCAATAACAATCTGCACCTGTTGCAGCGCTATTTGA
AACTCCGCAAACAGATTTTGGGACTGGAACAGTTGCATATGTATGATTTATACGTACCGCTTGTAAAAGAAGTCGACATG
AAAGTGACATACGAGGAAGCGAAAGACATTCTCCTTTCCGGCCTTACTCCTCTAGGAAAAGAGTATGTCGGGATCTTGCA
AGCAGGATTTGAAAACCGCTGGGTGGATGTTGTGGAAAATAAGGGGAAACGAAGCGGTGCCTATTCTTCGGGCGCATATG
GCACGAATCCTTATATCCTCATGAATTGGCAGGATAACGTCAACAACTTATTTACATTGGCACATGAATTCGGGCACAGT
GTGCACAGCTACTATACAAGAAAAAACCAGCCATATCCATACGGCAATTACTCCATATTTGTCGCGGAAGTGGCTTCTAC
ATGCAATGAAGCACTACTTGGAGATTATATGCAAAAAGCGACTGCTGATAAACAGGAGCGTCTATATTTGATTAACCATT
ACTTGGAAGGCTTTCGTGGAACCGTTTTTCGCCAGACGATGTTTGCGGAATTTGAGCATGTAATCCACCAAAAAGCTCAA
GAAGGGACTGCCTTAACCGCAGACTTCCTTACAAAACAATACTATGAATTAAACAAAAAATATTTTGGCGAGGACCATAT
CCATATTGACGAACAAATCGGGCTTGAATGGTCGAGAATCCCCCATTTTTACTATAATTATTACGTTTATCAATATGCTA
CAGGATTCAGCGCCGCAACTGCATTAAGCAAACAAATATTGGAAGAAGGTGAAACAGCTGTCGGGCGATATATCAACTTC
TTAAAAGCGGGCAACTCTGATTATCCGATCGAAGTGCTCAAACAGGCAGGGGTTGACATGACAACAACAGAGCCGATCGA
AGCGGCATGTAAAGTGTTTGAAGAAAAACTGAATGAAATGGAACAACTGTTAATGTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

98.35

0.493

Multiple sequence alignment