Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST31_RS00995 Genome accession   NZ_CP150169
Coordinates   208868..209818 (-) Length   316 a.a.
NCBI ID   WP_077110322.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203868..214818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS00970 (NST31_00970) - 205373..205600 (-) 228 WP_077110327.1 hypothetical protein -
  NST31_RS00975 (NST31_00975) - 205938..206123 (-) 186 WP_077110326.1 H-type small acid-soluble spore protein -
  NST31_RS00980 (NST31_00980) - 206188..207147 (-) 960 WP_077110325.1 siderophore ABC transporter substrate-binding protein -
  NST31_RS00985 (NST31_00985) - 207167..207925 (-) 759 WP_077110324.1 ATP-binding cassette domain-containing protein -
  NST31_RS00990 (NST31_00990) - 207922..208875 (-) 954 WP_077110323.1 iron chelate uptake ABC transporter family permease subunit -
  NST31_RS00995 (NST31_00995) ceuB 208868..209818 (-) 951 WP_077110322.1 ABC transporter permease Machinery gene
  NST31_RS01000 (NST31_01000) - 210118..210828 (-) 711 WP_077110321.1 EcsC family protein -
  NST31_RS01005 (NST31_01005) - 211275..211466 (-) 192 WP_077110320.1 hypothetical protein -
  NST31_RS01010 (NST31_01010) - 211483..214614 (-) 3132 WP_339163408.1 AAA family ATPase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34841.13 Da        Isoelectric Point: 9.4173

>NTDB_id=964649 NST31_RS00995 WP_077110322.1 208868..209818(-) (ceuB) [Siminovitchia sp. FSL W7-1587]
MRITYFVLILLFLCALSLFIGVSDITPLDLLDFSSEETEVFLVSRLPRLISIILAGAGMSICGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFSNAAMLVKMSVAFAFALAGSFLFMNILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKADVI
QNMSAWLQGDFSMIMKGRYELLYISIPIILLAYFFAHRFTVAGMGEDFAKNLGLSYKQTVNIGLILVSLVTATVVLTVGM
IPFLGLIIPNIISIFMGDHMKKTLPYTALLGAIFLLACDVLGRVLIYPYEISISLMVGIIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=964649 NST31_RS00995 WP_077110322.1 208868..209818(-) (ceuB) [Siminovitchia sp. FSL W7-1587]
GTGAGAATAACATATTTCGTTTTAATCCTTCTTTTTTTATGTGCTCTTTCTTTGTTTATAGGAGTCAGCGATATTACTCC
TTTAGATTTACTCGATTTTTCATCAGAAGAAACAGAAGTATTTCTGGTCAGCCGGCTTCCGCGGCTTATATCCATCATTT
TAGCAGGAGCGGGTATGAGCATTTGTGGGCTGATCATGCAGCAATTAAGCCGAAACAAATTTGTTTCGCCTACAACAGCC
GGAACTTTGGATGCAACAAGACTGGGGATCCTTGTCTCCATGCTTTTGTTCTCCAACGCTGCAATGCTCGTAAAAATGTC
AGTGGCATTTGCATTTGCGCTTGCGGGTTCGTTTTTGTTTATGAATATCCTCAATCGCATTAAATTTAAAGACGCTATTT
TTATTCCGCTCGTCGGACTCATGTTTGGAAATATATTATCGTCCATAACAACGTTTTTTGCCTATAAGGCCGATGTGATC
CAAAACATGTCAGCATGGCTGCAGGGTGACTTTTCAATGATCATGAAAGGCCGATATGAGCTGCTGTACATAAGCATACC
CATTATATTGTTAGCTTACTTCTTCGCCCATCGATTCACGGTTGCCGGAATGGGAGAAGATTTTGCGAAAAATCTTGGAC
TTTCCTATAAGCAAACCGTCAATATCGGCTTGATACTCGTTTCACTTGTAACGGCAACAGTCGTATTAACGGTAGGGATG
ATTCCTTTTTTAGGTTTGATTATACCAAACATCATATCTATCTTTATGGGCGACCATATGAAAAAAACCTTGCCTTACAC
GGCATTGCTCGGAGCCATATTTCTTTTGGCATGTGATGTTTTGGGCCGCGTTTTAATTTACCCATATGAAATTTCCATTA
GTTTAATGGTGGGCATTATAGGCAGCGGTATTTTCTTATATTTGCTTTTTCGGAGGAAGGCATATGCGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.896

97.468

0.525

Multiple sequence alignment