Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYE79_RS00135 Genome accession   NZ_CP150168
Coordinates   23553..24917 (+) Length   454 a.a.
NCBI ID   WP_198006248.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 18553..29917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS00105 (NYE79_00105) comW 19963..20199 (+) 237 WP_000939513.1 sigma(X)-activator ComW -
  NYE79_RS00110 (NYE79_00110) - 20441..21727 (+) 1287 WP_247931671.1 adenylosuccinate synthase -
  NYE79_RS00115 (NYE79_00115) tadA 21928..22395 (+) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  NYE79_RS00125 (NYE79_00125) - 22582..23025 (+) 444 WP_084880021.1 dUTP diphosphatase -
  NYE79_RS00130 (NYE79_00130) - 23027..23542 (+) 516 WP_216728801.1 histidine phosphatase family protein -
  NYE79_RS00135 (NYE79_00135) radA 23553..24917 (+) 1365 WP_198006248.1 DNA repair protein RadA Machinery gene
  NYE79_RS00140 (NYE79_00140) - 24990..25484 (+) 495 WP_025170864.1 carbonic anhydrase -
  NYE79_RS00145 (NYE79_00145) - 25699..26667 (+) 969 WP_216728800.1 ribose-phosphate diphosphokinase -
  NYE79_RS00150 (NYE79_00150) - 26787..27224 (+) 438 WP_180833641.1 CoA-binding protein -
  NYE79_RS00155 (NYE79_00155) - 27253..28263 (-) 1011 WP_216728799.1 putative sulfate exporter family transporter -
  NYE79_RS00160 (NYE79_00160) - 28415..29584 (+) 1170 WP_339293711.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49603.11 Da        Isoelectric Point: 5.8766

>NTDB_id=964575 NYE79_RS00135 WP_198006248.1 23553..24917(+) (radA) [Streptococcus sp. FSL W8-0197]
MIAKKKATFVCQNCEYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=964575 NYE79_RS00135 WP_198006248.1 23553..24917(+) (radA) [Streptococcus sp. FSL W8-0197]
ATTATCGCAAAGAAAAAAGCGACATTTGTGTGTCAAAATTGTGAATATAATTCACCTAAGTATCTAGGACGCTGTCCAAA
CTGTGGATCTTGGTCTTCTTTTGTTGAAGAAGTTGAGGTTGCAGAGGTCAAAAATGCGCGTGTGTCTTTGACAGGTGAAA
AAACCAAGCCTATGAAACTGGCTGAAGTAACGTCTATCAATGTCAATAGAACCAAGACCGAGATGGAGGAATTTAACCGT
GTACTTGGAGGCGGAGTGGTACCAGGGAGTCTCGTCCTTATCGGTGGGGATCCTGGAATCGGGAAATCAACGCTTCTTTT
ACAAGTTTCAACCCAGTTGTCTCAAGTGGGTACGGTTCTCTACGTCAGTGGTGAGGAGTCTGCCCAGCAAATCAAGCTAC
GAGCAGAGCGCTTGGGGGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGAGCTGAGGTA
GAGCGCATCCAACCTGACTTTCTTATCATCGACTCCATTCAGACTATTATGTCTCCTGAAATTTCTGGAGTGCAAGGGTC
AGTTTCTCAAGTGCGCGAAGTAACTGCTGAGCTCATGCAGCTGGCCAAGACTAATAACATTGCCATCTTTATCGTAGGGC
ATGTGACCAAGGAAGGTACTCTGGCTGGTCCTCGTATGTTGGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGGGAA
CGCCACCATACCTTCCGTATCTTGCGAGCAGTCAAAAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGATGCA
ATCAGGTGGCTTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAAGAACGTTTGGATGGGGCCACTGGTTCATCAA
TCGTGGTAACTATGGAAGGGACACGTCCGATTTTGGCGGAGGTTCAAGCCTTGGTGACACCGACCATGTTTGGAAATGCC
AAGCGTACGACGACAGGGCTTGACTTCAATCGTGCTAGTTTGATTATGGCTGTTTTGGAAAAACGTGCAGGGCTTCTCTT
GCAAAATCAAGATGCCTATCTCAAATCTGCTGGTGGTGTCAAACTAGACGAGCCTGCTATTGACTTAGCTGTTGCAGTGG
CTATTGCCTCTAGTTACAAGGACAAGCCAACCAATCCTCAAGAATGCTTTGTAGGAGAGTTAGGCTTGACTGGAGAGATT
CGGCGTGTGAATCGTATCGAGCAGCGCATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTC
CTTGACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.117

99.78

0.989
  radA Streptococcus mitis SK321

99.117

99.78

0.989
  radA Streptococcus pneumoniae Rx1

99.117

99.78

0.989
  radA Streptococcus pneumoniae D39

99.117

99.78

0.989
  radA Streptococcus pneumoniae R6

99.117

99.78

0.989
  radA Streptococcus pneumoniae TIGR4

99.117

99.78

0.989
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.78

0.628

Multiple sequence alignment