Detailed information NTG0964535

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEH3_RS04145
• Genome accession: NZ_CP174245
• Coordinates: 929414..930439 (-)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF544
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 924414..935439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEH3_RS04120 (ACJEH3_04120)	-	925682..926002 (-)	321	WP_010947020.1	hypothetical protein	-
ACJEH3_RS04125 (ACJEH3_04125)	ruvA	926052..926651 (-)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEH3_RS04130 (ACJEH3_04130)	ruvC	926648..927172 (-)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEH3_RS04135 (ACJEH3_04135)	-	927172..927915 (-)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEH3_RS04140 (ACJEH3_04140)	hmgA	928061..929311 (+)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEH3_RS04145 (ACJEH3_04145)	rpoS	929414..930439 (-)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEH3_RS04150 (ACJEH3_04150)	-	930534..931268 (-)	735	WP_408069185.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEH3_RS04155 (ACJEH3_04155)	surE	931287..932042 (-)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEH3_RS04160 (ACJEH3_04160)	-	932045..932428 (-)	384	WP_010947012.1	hypothetical protein	-
ACJEH3_RS04165 (ACJEH3_04165)	-	932508..934232 (+)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEH3_RS04170 (ACJEH3_04170)	-	934280..934651 (-)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEH3_RS04175 (ACJEH3_04175)	-	934688..935005 (-)	318	WP_010947009.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=964535 ACJEH3_RS04145 WP_015444568.1 929414..930439(-) (rpoS) [Legionella pneumophila strain SPF544]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=964535 ACJEH3_RS04145 WP_015444568.1 929414..930439(-) (rpoS) [Legionella pneumophila strain SPF544]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548