Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ43_RS04425 Genome accession   NZ_CP150166
Coordinates   840679..841629 (+) Length   316 a.a.
NCBI ID   WP_339253358.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL W8-0480     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835679..846629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ43_RS04410 (NSQ43_04410) hflX 836106..837377 (+) 1272 WP_339253352.1 GTPase HflX -
  NSQ43_RS04415 (NSQ43_04415) - 837520..839238 (-) 1719 WP_339253355.1 ABC transporter ATP-binding protein -
  NSQ43_RS04420 (NSQ43_04420) - 839461..840348 (+) 888 WP_339253357.1 DUF6612 family protein -
  NSQ43_RS04425 (NSQ43_04425) ceuB 840679..841629 (+) 951 WP_339253358.1 ABC transporter permease Machinery gene
  NSQ43_RS04430 (NSQ43_04430) - 841622..842572 (+) 951 WP_339253360.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ43_RS04435 (NSQ43_04435) - 842569..843330 (+) 762 WP_339253362.1 ATP-binding cassette domain-containing protein -
  NSQ43_RS04440 (NSQ43_04440) - 843350..844306 (+) 957 WP_339253364.1 siderophore ABC transporter substrate-binding protein -
  NSQ43_RS04445 (NSQ43_04445) - 844518..845660 (+) 1143 WP_339254796.1 MFS transporter -
  NSQ43_RS04450 (NSQ43_04450) - 845892..846101 (+) 210 WP_339253366.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34953.29 Da        Isoelectric Point: 10.1295

>NTDB_id=964506 NSQ43_RS04425 WP_339253358.1 840679..841629(+) (ceuB) [Sporosarcina sp. FSL W8-0480]
MKKRYLFIALIVLSFLSLFVGVSSISPMDLLDFQSEKTEIFLISRLPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASTIEKMVVAFVFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNVI
QNMASWLQGDFSMIMVGRYELLYISIPVLIITYFYANRFTVAGMGEDFSKNLGLAYKRIVNIGLILVALVTTTVILTVGM
IPFLGLIIPNIVSIFHGDHLKKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=964506 NSQ43_RS04425 WP_339253358.1 840679..841629(+) (ceuB) [Sporosarcina sp. FSL W8-0480]
ATGAAGAAACGTTATTTGTTTATTGCACTTATAGTTCTATCATTCCTCTCGTTATTTGTTGGGGTGAGCTCGATATCACC
GATGGACCTTCTCGATTTTCAATCTGAGAAGACAGAAATTTTCCTCATAAGCCGCTTGCCAAGATTGGTTGCAATTCTTT
TAGCGGGCGCGGGAATGAGTATAGCAGGGCTTATAATGCAGCAGCTGAGCAGGAATAAATTTGTGTCACCGACAACTGCG
GGTACATTGGATGCAACTCGACTCGGGATATTGGTCTCGATGTTACTATTTACGAACGCATCGACGATTGAGAAAATGGT
TGTCGCATTTGTATTTGCACTTGCTGGAACGCTGCTGTTCATGCAGATATTAGACCGGATTAAGTTCAAAGACGCAATCT
TTATCCCACTCGTTGGACTAATGTTCGGAAATATTCTTTCTTCAATAACAACATTTTTCGCATATAAATCGAATGTTATC
CAAAATATGGCCTCTTGGCTACAAGGTGACTTTTCGATGATTATGGTTGGTCGGTACGAGCTTTTATACATAAGCATCCC
TGTGCTGATTATCACTTATTTTTACGCTAACCGATTTACGGTAGCTGGAATGGGTGAGGATTTCTCGAAAAACTTGGGGC
TCGCTTATAAGAGGATTGTCAATATCGGCCTAATTTTAGTGGCTTTAGTTACTACGACGGTCATCTTGACCGTCGGGATG
ATTCCTTTTTTAGGTCTGATCATTCCAAACATCGTCTCAATTTTCCATGGCGATCATTTGAAGAAGACATTGCCGCACAC
TGCTTTGTTAGGTGCGATATTCCTACTAATCTGTGATATTTTAGGCAGGGTTCTCATCTATCCTTACGAAATATCAATCA
GTCTGATGGTCGGAGTCATCGGAAGCGGTATATTCCTCTACTTGTTATTTAGGAGGAAAGCATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.15

95.253

0.525

Multiple sequence alignment