Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSU02_RS13290 Genome accession   NZ_CP150165
Coordinates   2738847..2740571 (-) Length   574 a.a.
NCBI ID   WP_144596804.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2733847..2745571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS13270 (NSU02_13270) lpdA 2734362..2735783 (-) 1422 WP_063388137.1 dihydrolipoyl dehydrogenase -
  NSU02_RS13275 (NSU02_13275) - 2735995..2736243 (+) 249 WP_063388136.1 DUF2627 domain-containing protein -
  NSU02_RS13280 (NSU02_13280) spo0A 2736265..2737059 (-) 795 WP_063388135.1 sporulation transcription factor Spo0A -
  NSU02_RS13285 (NSU02_13285) spoIVB 2737442..2738731 (-) 1290 WP_144596806.1 SpoIVB peptidase -
  NSU02_RS13290 (NSU02_13290) recN 2738847..2740571 (-) 1725 WP_144596804.1 DNA repair protein RecN Machinery gene
  NSU02_RS13295 (NSU02_13295) argR 2740593..2741042 (-) 450 WP_063388132.1 transcriptional regulator ArgR -
  NSU02_RS13300 (NSU02_13300) - 2741110..2741943 (-) 834 WP_066247615.1 TlyA family RNA methyltransferase -
  NSU02_RS13305 (NSU02_13305) dxs 2741936..2743837 (-) 1902 WP_339193036.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSU02_RS13310 (NSU02_13310) - 2743848..2744468 (-) 621 WP_339195800.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64929.49 Da        Isoelectric Point: 5.7729

>NTDB_id=964472 NSU02_RS13290 WP_144596804.1 2738847..2740571(-) (recN) [Aeribacillus sp. FSL W8-0870]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRAGEKRAELEGLFILEEEDHPCLKK
CHELGIDASEGMIVLNRNISANGKSICRINGKLVTIGILRDIGSTLVDIHGQHDHQELMDEQKHLHLLDEYGGEEVKKAK
DAYVKLYKKYADLTKRLKALSENEQQMAHRLDLLKFQLKEIDDADLKMDEDIKLQEERQEMLNFEKIYEALKNSYESLQG
EQRGLDFLRLAMNHLEEAAEFNKQLKEMSETLSNSFYVVEDLTFQLRNELERMEFNPDRLNMIEDRLHVIHRLKRKYGQT
IKDILQYRDEIEKEIDTIENRDSHIQTLRNELKSVVEELLTKSQHLTAIRKKYANKLTAQITSELKQLYMDKTTFKVQFS
QKEAQDSALIDGIPTKFGSDGMDFVEFYISTNPGEPLKPLAKIASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSG
RVAQAIGEKIYQVSINSQVLCITHLPQVAAMADNHLLIAKEVSKEGRTKTKVIPLSEKEKIAEIGRMIAGAEVTELSKQH
AKELLDLAISVKSS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=964472 NSU02_RS13290 WP_144596804.1 2738847..2740571(-) (recN) [Aeribacillus sp. FSL W8-0870]
ATGTTAGCGGAATTGTCGATTAAAAATTTTGCCATTATTGAATCCCTATCTCTTTCTTTTGAAAAAGGGCTGACAGTGCT
GACGGGAGAAACAGGTGCTGGGAAATCGATCATTATTGATGCTATATCTCTTCTTGTAGGAGGACGCGGTTCTTCTGAAT
TTGTCCGAGCCGGTGAAAAGCGCGCTGAATTGGAAGGGTTGTTTATATTGGAAGAAGAGGACCATCCGTGCTTGAAAAAG
TGCCATGAATTAGGAATAGATGCTAGTGAAGGCATGATTGTTTTAAACCGGAATATCTCCGCTAACGGAAAAAGCATTTG
CAGAATTAATGGAAAGCTTGTCACAATCGGAATTCTCCGGGATATTGGGAGCACATTAGTCGATATACATGGACAGCACG
ATCATCAAGAGCTGATGGACGAGCAAAAGCATCTTCATCTTCTCGACGAATATGGCGGCGAAGAAGTGAAAAAAGCAAAG
GATGCATACGTAAAGCTTTATAAAAAATACGCGGACTTAACAAAGCGGTTAAAAGCCCTTTCAGAAAATGAGCAGCAGAT
GGCGCATCGATTGGATTTATTGAAGTTTCAATTAAAGGAAATTGACGATGCCGATTTAAAAATGGATGAAGATATAAAGC
TTCAGGAAGAACGGCAGGAAATGTTAAATTTTGAAAAAATTTATGAAGCCTTGAAAAATAGCTATGAATCGCTGCAAGGA
GAGCAGCGCGGGCTTGATTTTTTACGACTTGCCATGAATCATTTAGAAGAAGCAGCAGAATTTAATAAACAGTTAAAAGA
AATGTCCGAAACGCTGTCGAACAGTTTTTACGTTGTAGAGGATTTAACGTTTCAGCTTAGAAATGAATTAGAACGCATGG
AATTTAATCCTGATCGGTTAAATATGATAGAGGACCGCCTCCATGTCATTCATCGGTTAAAACGAAAGTACGGGCAAACA
ATCAAAGACATTTTGCAATATAGAGATGAAATTGAAAAAGAGATCGATACGATTGAAAACCGTGATAGCCATATTCAAAC
GCTTAGAAATGAGCTTAAATCTGTCGTCGAAGAACTGCTGACAAAATCCCAACATTTAACGGCAATAAGAAAAAAATATG
CAAACAAGCTAACTGCTCAAATCACATCTGAATTAAAACAGCTGTACATGGATAAAACTACATTTAAGGTTCAATTTTCG
CAGAAAGAGGCCCAAGATTCCGCTTTGATCGATGGAATTCCAACGAAATTTGGAAGTGACGGCATGGATTTTGTGGAATT
TTACATTTCCACCAATCCAGGCGAACCTCTTAAGCCTCTTGCGAAAATTGCTTCCGGCGGGGAATTATCAAGAATCATGC
TTGCCTTAAAAACGATTTTTTCCAAGCATCAAGGAATTACTTCCATCATATTTGACGAGGTGGATACTGGTGTAAGCGGC
CGTGTCGCCCAAGCGATCGGAGAAAAAATTTATCAGGTGTCGATTAACTCTCAAGTGCTATGCATCACGCATCTTCCTCA
AGTTGCAGCGATGGCTGACAACCATCTATTAATTGCTAAGGAAGTAAGCAAAGAGGGAAGAACGAAAACAAAGGTTATTC
CGCTTTCTGAAAAAGAAAAAATTGCAGAAATCGGCCGGATGATTGCTGGAGCGGAAGTGACGGAATTGTCGAAGCAGCAT
GCAAAAGAGCTGTTGGATCTGGCTATATCGGTGAAATCCTCCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.392

100

0.627

Multiple sequence alignment