Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSU02_RS00640 Genome accession   NZ_CP150165
Coordinates   126203..127579 (+) Length   458 a.a.
NCBI ID   WP_339193812.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 121203..132579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS00620 (NSU02_00620) - 121573..122034 (+) 462 WP_339193807.1 CtsR family transcriptional regulator -
  NSU02_RS00625 (NSU02_00625) - 122049..122597 (+) 549 WP_063387128.1 UvrB/UvrC motif-containing protein -
  NSU02_RS00630 (NSU02_00630) - 122599..123687 (+) 1089 WP_339193809.1 protein arginine kinase -
  NSU02_RS00635 (NSU02_00635) clpC 123684..126119 (+) 2436 WP_063387130.1 ATP-dependent protease ATP-binding subunit ClpC -
  NSU02_RS00640 (NSU02_00640) radA 126203..127579 (+) 1377 WP_339193812.1 DNA repair protein RadA Machinery gene
  NSU02_RS00645 (NSU02_00645) disA 127583..128644 (+) 1062 WP_339193814.1 DNA integrity scanning diadenylate cyclase DisA -
  NSU02_RS00650 (NSU02_00650) - 128744..129838 (+) 1095 WP_063387133.1 PIN/TRAM domain-containing protein -
  NSU02_RS00655 (NSU02_00655) ispD 129854..130546 (+) 693 WP_063387134.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSU02_RS00660 (NSU02_00660) ispF 130543..131022 (+) 480 WP_339193817.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSU02_RS00665 (NSU02_00665) gltX 131094..132554 (+) 1461 WP_063387136.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50136.94 Da        Isoelectric Point: 7.4331

>NTDB_id=964451 NSU02_RS00640 WP_339193812.1 126203..127579(+) (radA) [Aeribacillus sp. FSL W8-0870]
MSKIKSKFICQSCGYESQKWMGKCPGCGEWNSMVEEVIKPKGKHRIAFSHSESSTVSKPSPIHQIQAAQEPRMLTGLHEF
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSSQLAERGNDVLYISGEESLKQTKLRSDRLGVKGERLFVLSETDLEIII
QSIMETEPAFVIIDSIQTIYNSEIASAPGSVSQVRECTAELMRLAKTKGIPIFIVGHVTKDGTIAGPRILEHMVDTVLYF
EGDRHHTYRILRAVKNRFGSTNEIGIFEMKEAGLKEVLNPSEVFLEERAKGASGSTVVASMEGTRPVLVEIQALITPTSF
GNPRRMANGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPSIDLAICISIASSFKDVPTNIYDVFVGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRIFLPKANLGGWKWPEDIEIVGVQNISEALELAIGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=964451 NSU02_RS00640 WP_339193812.1 126203..127579(+) (radA) [Aeribacillus sp. FSL W8-0870]
ATGTCAAAGATCAAATCAAAATTTATTTGTCAATCGTGCGGATATGAATCGCAGAAATGGATGGGAAAATGTCCAGGGTG
CGGCGAATGGAATTCAATGGTTGAAGAAGTTATCAAGCCAAAGGGAAAACACCGCATTGCTTTTAGTCATTCCGAATCAT
CCACTGTCAGCAAACCTTCTCCAATTCATCAAATCCAAGCTGCGCAAGAACCTAGAATGCTTACAGGACTTCATGAGTTT
AACCGCGTATTGGGAGGCGGAATTGTAAAAGGATCTCTCGTTTTAATTGGAGGGGATCCTGGAATTGGAAAATCCACTCT
CTTATTGCAAGTCTCCTCACAGCTGGCAGAGAGAGGGAACGATGTTTTATACATTTCGGGAGAAGAATCTTTAAAACAGA
CAAAACTTCGCTCCGACCGACTCGGGGTAAAAGGCGAAAGACTTTTCGTGCTTTCTGAAACGGACTTAGAAATCATCATT
CAATCCATAATGGAAACTGAACCGGCTTTTGTCATCATTGATTCCATTCAAACGATTTATAACAGTGAAATTGCTTCTGC
TCCTGGAAGCGTATCTCAGGTTCGAGAATGTACGGCTGAATTAATGAGATTGGCAAAGACAAAAGGAATTCCGATTTTTA
TTGTCGGTCATGTAACAAAAGACGGCACAATTGCAGGGCCGCGCATTTTAGAACATATGGTTGATACTGTATTGTATTTT
GAAGGTGATCGACACCATACGTACCGAATTTTACGGGCAGTTAAAAACAGGTTCGGATCCACTAACGAAATAGGAATTTT
TGAAATGAAGGAAGCAGGTCTTAAAGAAGTGCTCAACCCGTCAGAAGTGTTTTTAGAAGAGCGTGCAAAAGGGGCATCTG
GTTCAACAGTAGTCGCTTCCATGGAAGGGACAAGACCTGTTCTAGTCGAAATACAAGCTTTAATCACCCCGACAAGCTTT
GGAAACCCCAGAAGGATGGCAAATGGGATTGATCATAATCGTGTTTCTTTGTTGATGGCGGTATTGGAAAAACGTGTTGG
TTTATTGCTCCAAAACCAAGATGCCTACTTAAAAGTTGCCGGCGGGGTGAAATTAGACGAGCCTTCAATTGACTTGGCAA
TTTGCATCAGTATAGCTTCAAGCTTTAAAGATGTTCCGACGAACATTTATGATGTTTTTGTAGGTGAGGTTGGTTTAACA
GGAGAAATTAGAAGGGTTTCACGAATTGAACAGCGTGTACAAGAAGCTGCCAAACTGGGATTTAAGCGGATTTTTTTACC
GAAAGCCAATCTGGGCGGTTGGAAATGGCCGGAAGATATAGAAATTGTCGGTGTGCAAAACATTTCAGAAGCGCTCGAAC
TTGCAATAGGGGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.471

100

0.766
  radA Streptococcus pneumoniae Rx1

62.555

99.127

0.62
  radA Streptococcus pneumoniae D39

62.555

99.127

0.62
  radA Streptococcus pneumoniae R6

62.555

99.127

0.62
  radA Streptococcus pneumoniae TIGR4

62.555

99.127

0.62
  radA Streptococcus mitis NCTC 12261

62.555

99.127

0.62
  radA Streptococcus mitis SK321

62.555

99.127

0.62

Multiple sequence alignment