Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSQ53_RS13840 Genome accession   NZ_CP150164
Coordinates   2631147..2631914 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus sp. PS11(2022) isolate PS11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2626147..2636914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ53_RS13820 (NSQ53_13820) - 2626322..2627134 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NSQ53_RS13825 (NSQ53_13825) ccpN 2627160..2627798 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NSQ53_RS13830 (NSQ53_13830) glyS 2627931..2629970 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  NSQ53_RS13835 (NSQ53_13835) glyQ 2629963..2630850 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NSQ53_RS13840 (NSQ53_13840) recO 2631147..2631914 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  NSQ53_RS13845 (NSQ53_13845) - 2631951..2632094 (-) 144 WP_003230053.1 YqzL family protein -
  NSQ53_RS13850 (NSQ53_13850) era 2632242..2633147 (-) 906 WP_003230051.1 GTPase Era -
  NSQ53_RS13855 (NSQ53_13855) - 2633128..2633538 (-) 411 WP_003230049.1 cytidine deaminase -
  NSQ53_RS13860 (NSQ53_13860) - 2633657..2634028 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  NSQ53_RS13865 (NSQ53_13865) ybeY 2634009..2634482 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  NSQ53_RS13870 (NSQ53_13870) pgpH 2634483..2636618 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=964414 NSQ53_RS13840 WP_003230055.1 2631147..2631914(-) (recO) [Bacillus sp. PS11(2022) isolate PS11]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=964414 NSQ53_RS13840 WP_003230055.1 2631147..2631914(-) (recO) [Bacillus sp. PS11(2022) isolate PS11]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment