Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABE75_RS25370 Genome accession   NZ_AP028869
Coordinates   5165805..5166797 (-) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain JBEHAAB-19-0176     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5160805..5171797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABE75_RS25360 yieP 5163697..5164389 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AABE75_RS25365 mdtD 5164412..5165839 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AABE75_RS25370 cytR 5165805..5166797 (-) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  AABE75_RS25375 rbsK 5166801..5167730 (-) 930 WP_001361791.1 ribokinase -
  AABE75_RS25380 rbsB 5167856..5168746 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABE75_RS25385 rbsC 5168771..5169736 (-) 966 WP_022646318.1 ribose ABC transporter permease -
  AABE75_RS25390 rbsA 5169741..5171246 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AABE75_RS25395 rbsD 5171254..5171673 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=96437 AABE75_RS25370 WP_022646319.1 5165805..5166797(-) (cytR) [Escherichia coli strain JBEHAAB-19-0176]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=96437 AABE75_RS25370 WP_022646319.1 5165805..5166797(-) (cytR) [Escherichia coli strain JBEHAAB-19-0176]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment