Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ81_RS16620 Genome accession   NZ_CP150163
Coordinates   3185015..3185659 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS65     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180015..3190659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ81_RS16585 (NSQ81_16585) - 3181207..3181638 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ81_RS16590 (NSQ81_16590) - 3181638..3181979 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ81_RS16595 (NSQ81_16595) - 3181972..3183453 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NSQ81_RS16600 (NSQ81_16600) - 3183459..3183935 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  NSQ81_RS16605 (NSQ81_16605) - 3183935..3184219 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ81_RS16610 (NSQ81_16610) mnhG 3184203..3184577 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NSQ81_RS16615 (NSQ81_16615) - 3184616..3184996 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NSQ81_RS16620 (NSQ81_16620) comA 3185015..3185659 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ81_RS16625 (NSQ81_16625) comP 3185740..3188049 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  NSQ81_RS16630 (NSQ81_16630) comX 3188064..3188231 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  NSQ81_RS16635 (NSQ81_16635) comQ 3188219..3189118 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  NSQ81_RS16640 (NSQ81_16640) degQ 3189303..3189443 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ81_RS16645 (NSQ81_16645) - 3189665..3189790 (+) 126 WP_003228793.1 hypothetical protein -
  NSQ81_RS16650 (NSQ81_16650) - 3189904..3190272 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=964341 NSQ81_RS16620 WP_003220716.1 3185015..3185659(-) (comA) [Bacillus sp. PS65]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=964341 NSQ81_RS16620 WP_003220716.1 3185015..3185659(-) (comA) [Bacillus sp. PS65]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment