Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACJEHO_RS10390 Genome accession   NZ_CP174241
Coordinates   2299251..2301428 (-) Length   725 a.a.
NCBI ID   WP_011216700.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF584     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2294251..2306428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHO_RS10365 (ACJEHO_10365) - 2296002..2296808 (+) 807 WP_011216705.1 sulfite exporter TauE/SafE family protein -
  ACJEHO_RS10370 (ACJEHO_10370) lgt 2296826..2297596 (+) 771 WP_011216704.1 prolipoprotein diacylglyceryl transferase -
  ACJEHO_RS10375 (ACJEHO_10375) thyA 2297593..2298387 (+) 795 WP_011216703.1 thymidylate synthase -
  ACJEHO_RS10380 (ACJEHO_10380) - 2298463..2298753 (+) 291 WP_070322286.1 hypothetical protein -
  ACJEHO_RS10385 (ACJEHO_10385) - 2298862..2299254 (-) 393 WP_011216701.1 thioesterase family protein -
  ACJEHO_RS10390 (ACJEHO_10390) priA 2299251..2301428 (-) 2178 WP_011216700.1 primosomal protein N' Machinery gene
  ACJEHO_RS10395 (ACJEHO_10395) - 2301429..2301923 (-) 495 WP_011216699.1 6-carboxytetrahydropterin synthase -
  ACJEHO_RS10400 (ACJEHO_10400) - 2301926..2303038 (-) 1113 WP_011216698.1 class I SAM-dependent methyltransferase -
  ACJEHO_RS10405 (ACJEHO_10405) - 2303215..2303970 (+) 756 WP_041173838.1 pteridine reductase -
  ACJEHO_RS10410 (ACJEHO_10410) - 2304027..2304386 (+) 360 WP_011216696.1 hypothetical protein -
  ACJEHO_RS10415 (ACJEHO_10415) - 2304445..2305431 (-) 987 WP_011216695.1 tRNA-dihydrouridine synthase -
  ACJEHO_RS10420 (ACJEHO_10420) - 2305513..2305956 (+) 444 WP_011216694.1 hypothetical protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 81627.01 Da        Isoelectric Point: 9.2839

>NTDB_id=964287 ACJEHO_RS10390 WP_011216700.1 2299251..2301428(-) (priA) [Legionella pneumophila strain SPF584]
MNDIYQVCIPHTNRDCFDYEALDLTPCIGGRVWVPFRNQTRVGIVINKVCDQQTGHSLKKITSIIDEKPLVPEALLELCL
WVGSYYQSPLSEVIPLVIPKKYRLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
NGAQIAALLACQAINLSQQVTLPTKIPEKLSPPLTLNPEQAVAVASIFEHIHHYQCFLLQGVTGSGKTEVYLHVIAKILE
QGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEH
DSSLKQMEGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLIDLRSQMVQHGL
ALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLTLHKQAGQMICHHCGLTQRIPLFCNNCQSKE
LIPVGSGTQRIYEFLSHQFPDTNVLRIDRDEVRKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVVDADAGF
YNQDFRAIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQEAEMPPFQFLAVIRAQG
RTVSKVDQFLKATKDQIQAHPLTVLGPAPAPLPRKANQHRMQLLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVD
PMDLS

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=964287 ACJEHO_RS10390 WP_011216700.1 2299251..2301428(-) (priA) [Legionella pneumophila strain SPF584]
ATGAACGATATTTATCAAGTTTGTATCCCCCATACCAATCGAGATTGTTTTGATTACGAAGCCCTGGATTTAACTCCATG
CATTGGCGGAAGAGTATGGGTTCCTTTCCGTAATCAAACCCGAGTGGGCATTGTAATCAATAAAGTTTGTGACCAGCAAA
CGGGCCATTCGTTAAAGAAAATCACTTCAATAATCGATGAGAAACCTCTCGTTCCTGAAGCTCTCTTAGAGCTTTGTCTA
TGGGTAGGAAGCTATTATCAGTCACCATTATCTGAAGTGATTCCTTTGGTAATACCCAAAAAATATCGCCTGGGTTTACC
CTGCTCACTACCTACAGAAGATTTTTATCAATTGAATATACCTGTTGAAAAGGCAAAGACACTCATCTCGAAAAAAGCAA
AAAAACAACATGAGTTGATTGATTTTTTAAGCAGGCACCAGAAAGGGATTTCCAAACAGACCTTAAAACAACATGGCTAC
AACGGAGCTCAAATTGCGGCACTACTTGCTTGTCAAGCCATTAACCTGTCACAGCAAGTTACCTTGCCAACCAAAATTCC
TGAAAAACTCAGTCCACCGCTAACACTCAATCCTGAACAAGCCGTTGCCGTAGCTTCCATTTTCGAACACATCCATCACT
ACCAATGCTTTTTACTGCAAGGTGTTACCGGAAGTGGTAAGACAGAGGTTTATTTGCATGTCATCGCCAAAATATTGGAG
CAAGGCAAACAAGTATTGGTGTTGGTACCAGAAATCGGGTTAACCCCTCAGCTTTTATCTCGTTTTACAGCCCGATTTAA
CCATCCCATAACCGTATTACATTCCAATTTGAATGAATCAGAAAGACAAATTGCCTGGCAGCTGGCAAAAGAGAACAAAG
TTAAAATGGTGATTGGAACTCGTTCTGCCGTTTTTACCCCTCTGCCCAATCTCGGTTTAATTATCATCGATGAAGAGCAT
GACAGTTCGCTCAAACAAATGGAGGGGGTGCGTTATTCTGCGCGAGATACTGCTTTAATGCGTGCTCACCTTGCCAATAT
TCCTATCATTCTTGGTACAGCCACTCCCAGTCTGGAAACCATCCACAACTGCAAACAAAAAAAATATAATTTATTACGCT
TAACGCATAAAGCTGCCTCCACTACACCATTACACTATCAACTGATCGATTTACGATCGCAAATGGTACAGCATGGCTTG
GCTCTCCCAACCCTTAAAATCATAGAAAATCATTTGCTGCAACAAAACCAGGTTCTTGTTTTCATTAACCGACGCGGCTT
TGCCCCAGTGTTACTTTGCCATCAATGTGGATGGATGGTTGATTGCAAAGCATGTGATAGCCATTTAACCTTGCATAAAC
AGGCAGGACAAATGATTTGTCATCATTGCGGATTAACCCAAAGAATACCCTTGTTTTGCAATAACTGCCAAAGCAAGGAA
CTAATCCCCGTAGGATCTGGCACCCAGAGAATTTATGAGTTTTTAAGCCATCAGTTTCCAGATACGAATGTTTTACGAAT
TGACCGAGATGAGGTTCGTAAAAAAAATTCTCTAAACAGCCATTTGGACAAAATTAATAAAGGAGAAGCTCAGCTGATCA
TAGGCACTCAAATGCTAGCCAAGGGACACCATTTCCCCCGCCTATCCCTGGTCGTTGTCGTAGATGCTGATGCGGGCTTT
TACAACCAGGATTTCCGGGCTATTGAACATTTGGGGCAATTATTAACTCAAGTATCTGGACGAGCTGGGCGAGCAGAACA
TCCCGGGCAAGTATTGATTCAAACTTATTTACCTGATCATCCCCTGCTTAATCTACTCATTCAGCATGGGTATGATGAGT
TTGCAAACGCTTTATTAATTTCAAGACAAGAGGCTGAAATGCCCCCTTTTCAGTTTTTAGCGGTCATCAGAGCTCAGGGC
AGAACCGTCAGCAAGGTGGATCAATTCCTAAAAGCAACCAAAGATCAAATTCAGGCTCATCCTCTCACGGTACTGGGTCC
TGCACCAGCTCCTTTGCCACGAAAAGCTAACCAGCATAGGATGCAACTATTAATTAAATCCCCTTCAAGAAAAGTTCTAA
AAAGTTCATTGACGCAATTAAGAGAGTGGTTAACAATGAACAAATTAAGTAATGGCATCCGCTGGAATGTGGATGTTGAT
CCTATGGACTTATCATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(489-585)

Type III restriction enzyme, res subunit (ResIII)

(195-357)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(442-468)

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-99)

Primosomal protein N C-terminal domain (PriA_C)

(629-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

41.94

100

0.423