Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NST88_RS16465 Genome accession   NZ_CP150162
Coordinates   3161154..3161798 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS68     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3156154..3166798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST88_RS16430 (NST88_16430) - 3157346..3157777 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NST88_RS16435 (NST88_16435) - 3157777..3158118 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NST88_RS16440 (NST88_16440) - 3158111..3159592 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NST88_RS16445 (NST88_16445) - 3159598..3160074 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  NST88_RS16450 (NST88_16450) - 3160074..3160358 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NST88_RS16455 (NST88_16455) mnhG 3160342..3160716 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NST88_RS16460 (NST88_16460) - 3160755..3161135 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NST88_RS16465 (NST88_16465) comA 3161154..3161798 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NST88_RS16470 (NST88_16470) comP 3161879..3164188 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  NST88_RS16475 (NST88_16475) comX 3164203..3164370 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  NST88_RS16480 (NST88_16480) comQ 3164358..3165257 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  NST88_RS16485 (NST88_16485) degQ 3165442..3165582 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NST88_RS16490 (NST88_16490) - 3165804..3165929 (+) 126 WP_003228793.1 hypothetical protein -
  NST88_RS16495 (NST88_16495) - 3166043..3166411 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=964255 NST88_RS16465 WP_003220716.1 3161154..3161798(-) (comA) [Bacillus sp. PS68]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=964255 NST88_RS16465 WP_003220716.1 3161154..3161798(-) (comA) [Bacillus sp. PS68]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment