Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NSS90_RS07990 Genome accession   NZ_CP150161
Coordinates   1494027..1494602 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus sp. PS93     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489027..1499602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS90_RS07960 (NSS90_07960) dapD 1489216..1489926 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NSS90_RS07965 (NSS90_07965) - 1489996..1491120 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  NSS90_RS07970 (NSS90_07970) - 1491182..1491427 (+) 246 WP_003232382.1 YkuS family protein -
  NSS90_RS07975 (NSS90_07975) mscT 1491464..1492267 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  NSS90_RS07980 (NSS90_07980) ahpA 1492504..1493046 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  NSS90_RS07985 (NSS90_07985) ykuV 1493115..1493561 (+) 447 WP_088325783.1 thiol-disulfide oxidoreductase YkuV -
  NSS90_RS07990 (NSS90_07990) rok 1494027..1494602 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  NSS90_RS07995 (NSS90_07995) cse15 1494643..1495608 (-) 966 WP_076457764.1 spore protein Cse15 -
  NSS90_RS08000 (NSS90_08000) - 1495745..1496344 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  NSS90_RS08005 (NSS90_08005) - 1496395..1497414 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  NSS90_RS08010 (NSS90_08010) glp 1497432..1498724 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  NSS90_RS08015 (NSS90_08015) mobB 1498685..1499206 (+) 522 WP_042974935.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=964139 NSS90_RS07990 WP_003232378.1 1494027..1494602(+) (rok) [Bacillus sp. PS93]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=964139 NSS90_RS07990 WP_003232378.1 1494027..1494602(+) (rok) [Bacillus sp. PS93]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAACCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCTGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment