Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DAETH_RS24540 Genome accession   NZ_AP026560
Coordinates   2653389..2653754 (+) Length   121 a.a.
NCBI ID   WP_319993718.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648389..2658754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS13480 (DAETH_26770) - 2648702..2649412 (-) 711 WP_264775392.1 SDR family oxidoreductase -
  DAETH_RS13485 (DAETH_26780) - 2649462..2649668 (-) 207 WP_264775393.1 hypothetical protein -
  DAETH_RS13490 (DAETH_26790) - 2649789..2650466 (-) 678 WP_264775394.1 NUDIX hydrolase -
  DAETH_RS13495 (DAETH_26800) dnaB 2650466..2653054 (-) 2589 WP_264775395.1 replicative DNA helicase -
  DAETH_RS24540 (DAETH_26810) pilV 2653389..2653754 (+) 366 WP_319993718.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DAETH_RS13510 (DAETH_26820) - 2653822..2654211 (+) 390 WP_264775396.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DAETH_RS13515 (DAETH_26830) - 2654223..2655734 (+) 1512 WP_264775397.1 O-antigen ligase family protein -
  DAETH_RS13520 (DAETH_26840) - 2655878..2656438 (+) 561 WP_264775398.1 DUF1802 family protein -
  DAETH_RS13525 (DAETH_26850) - 2656514..2656987 (-) 474 WP_264775399.1 hypothetical protein -
  DAETH_RS13530 (DAETH_26860) - 2657159..2657926 (+) 768 WP_264775400.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12749.55 Da        Isoelectric Point: 9.6567

>NTDB_id=96413 DAETH_RS24540 WP_319993718.1 2653389..2653754(+) (pilV) [Deinococcus aetherius strain ST0316]
MKNQKRTQGFTLIELLIVIAIIGILAAVLIPNLLSARNRANDSAVQSFVRNTVTAVEANRNSVTQALPTETNCATLQNVT
APAGLTSCAITYNTAADSYTIAAVSKTGKTFSYDGKQITGS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=96413 DAETH_RS24540 WP_319993718.1 2653389..2653754(+) (pilV) [Deinococcus aetherius strain ST0316]
ATGAAGAACCAGAAGCGTACGCAGGGCTTTACTCTCATCGAGCTGCTCATCGTGATCGCCATCATCGGCATCCTGGCGGC
GGTGCTCATCCCGAACCTGCTCAGCGCCCGCAACCGCGCCAACGACAGCGCCGTGCAGAGCTTCGTTCGCAACACCGTGA
CCGCCGTCGAGGCCAACCGTAACTCCGTGACCCAGGCTCTGCCGACCGAGACGAACTGCGCCACCCTCCAGAACGTCACG
GCCCCCGCTGGCCTGACGAGCTGCGCTATTACCTACAACACCGCCGCCGACAGCTACACCATTGCTGCCGTCAGCAAGAC
GGGCAAGACCTTCAGCTACGACGGCAAGCAGATCACCGGCAGCTAA

Domains

Predicted by InterproScan.

Pilin A4 (PilA4)

(41-119)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.613

100

0.529

Multiple sequence alignment