Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSS90_RS02070 Genome accession   NZ_CP150161
Coordinates   376634..377083 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus sp. PS93     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 371634..382083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS90_RS02035 (NSS90_02035) - 371786..372466 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSS90_RS02040 (NSS90_02040) - 372476..373339 (-) 864 WP_160243146.1 transporter substrate-binding domain-containing protein -
  NSS90_RS02045 (NSS90_02045) - 373500..373697 (+) 198 WP_160243144.1 hypothetical protein -
  NSS90_RS02050 (NSS90_02050) - 373716..374171 (+) 456 WP_160243142.1 RDD family protein -
  NSS90_RS02055 (NSS90_02055) - 374253..374585 (+) 333 WP_015252849.1 YckD family protein -
  NSS90_RS02060 (NSS90_02060) bglC 374739..376172 (+) 1434 WP_029317189.1 6-phospho-beta-glucosidase -
  NSS90_RS02065 (NSS90_02065) nin/comJ 376209..376607 (-) 399 WP_029317188.1 DNA-entry nuclease inhibitor Regulator
  NSS90_RS02070 (NSS90_02070) nucA/comI 376634..377083 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NSS90_RS02075 (NSS90_02075) tlpC 377251..378972 (-) 1722 WP_160243140.1 methyl-accepting chemotaxis protein TlpC -
  NSS90_RS02080 (NSS90_02080) hxlB 379083..379640 (-) 558 WP_339175779.1 6-phospho-3-hexuloisomerase -
  NSS90_RS02085 (NSS90_02085) hxlA 379646..380278 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  NSS90_RS02090 (NSS90_02090) hxlR 380510..380872 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=964115 NSS90_RS02070 WP_014475770.1 376634..377083(-) (nucA/comI) [Bacillus sp. PS93]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=964115 NSS90_RS02070 WP_014475770.1 376634..377083(-) (nucA/comI) [Bacillus sp. PS93]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987

Multiple sequence alignment