Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSQ12_RS14555 Genome accession   NZ_CP150160
Coordinates   2784167..2784913 (-) Length   248 a.a.
NCBI ID   WP_163138233.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779167..2789913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS14530 (NSQ12_14530) mreC 2779573..2780445 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  NSQ12_RS14535 (NSQ12_14535) mreB 2780476..2781489 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NSQ12_RS14540 (NSQ12_14540) radC 2781581..2782276 (-) 696 WP_041351757.1 DNA repair protein RadC -
  NSQ12_RS14545 (NSQ12_14545) - 2782313..2782882 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NSQ12_RS14550 (NSQ12_14550) spoIIB 2783035..2784033 (-) 999 WP_230488304.1 stage II sporulation protein SpoIIB -
  NSQ12_RS14555 (NSQ12_14555) comC 2784167..2784913 (-) 747 WP_163138233.1 A24 family peptidase Machinery gene
  NSQ12_RS14560 (NSQ12_14560) - 2785056..2786348 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSQ12_RS14565 (NSQ12_14565) valS 2786408..2789050 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  NSQ12_RS14570 (NSQ12_14570) - 2789496..2789687 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26451.04 Da        Isoelectric Point: 9.7944

>NTDB_id=964086 NSQ12_RS14555 WP_163138233.1 2784167..2784913(-) (comC) [Bacillus sp. PS95]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFVVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=964086 NSQ12_RS14555 WP_163138233.1 2784167..2784913(-) (comC) [Bacillus sp. PS95]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGTGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment