Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NSQ12_RS12435 Genome accession   NZ_CP150160
Coordinates   2426341..2427144 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2421341..2432144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS12410 (NSQ12_12410) - 2422487..2423218 (-) 732 WP_038429286.1 glycerophosphodiester phosphodiesterase -
  NSQ12_RS12415 (NSQ12_12415) - 2423297..2423917 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  NSQ12_RS12420 (NSQ12_12420) - 2423932..2424225 (-) 294 WP_003230284.1 lipoprotein -
  NSQ12_RS12425 (NSQ12_12425) - 2424533..2424685 (+) 153 WP_014480226.1 hypothetical protein -
  NSQ12_RS12430 (NSQ12_12430) - 2424758..2425876 (+) 1119 WP_128993136.1 NADH-dependent flavin oxidoreductase -
  NSQ12_RS12435 (NSQ12_12435) spo0A 2426341..2427144 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NSQ12_RS12440 (NSQ12_12440) spoIVB 2427420..2428700 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NSQ12_RS12445 (NSQ12_12445) recN 2428874..2430604 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  NSQ12_RS12450 (NSQ12_12450) argR 2430641..2431090 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NSQ12_RS12455 (NSQ12_12455) - 2431188..2432033 (-) 846 WP_160245701.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=964067 NSQ12_RS12435 WP_003226427.1 2426341..2427144(-) (spo0A) [Bacillus sp. PS95]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=964067 NSQ12_RS12435 WP_003226427.1 2426341..2427144(-) (spo0A) [Bacillus sp. PS95]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACAAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTACACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment