Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NSQ12_RS10635 Genome accession   NZ_CP150160
Coordinates   2117084..2118214 (+) Length   376 a.a.
NCBI ID   WP_032725937.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2104614..2119908 2117084..2118214 within 0


Gene organization within MGE regions


Location: 2104614..2119908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS10545 (NSQ12_10545) - 2104614..2105483 (-) 870 WP_124048215.1 hypothetical protein -
  NSQ12_RS10550 (NSQ12_10550) - 2105506..2106015 (-) 510 WP_339174698.1 super-infection exclusion protein B -
  NSQ12_RS10555 (NSQ12_10555) - 2106036..2106524 (-) 489 WP_131227495.1 hypothetical protein -
  NSQ12_RS10560 (NSQ12_10560) - 2106573..2107457 (-) 885 WP_131227496.1 DUF5677 domain-containing protein -
  NSQ12_RS10565 (NSQ12_10565) - 2107537..2107752 (-) 216 WP_124048211.1 hypothetical protein -
  NSQ12_RS10570 (NSQ12_10570) - 2107783..2107884 (+) 102 Protein_2028 hypothetical protein -
  NSQ12_RS10575 (NSQ12_10575) - 2107997..2108227 (+) 231 WP_277737202.1 hypothetical protein -
  NSQ12_RS10580 (NSQ12_10580) - 2108237..2108632 (-) 396 WP_339174703.1 UPF0715 family protein -
  NSQ12_RS10585 (NSQ12_10585) - 2108681..2109640 (-) 960 WP_144500925.1 DUF4062 domain-containing protein -
  NSQ12_RS10590 (NSQ12_10590) - 2109937..2110899 (-) 963 WP_339174705.1 DUF4062 domain-containing protein -
  NSQ12_RS10595 (NSQ12_10595) - 2110992..2111219 (-) 228 WP_124048207.1 helix-turn-helix transcriptional regulator -
  NSQ12_RS10600 (NSQ12_10600) - 2111385..2112389 (-) 1005 WP_192852128.1 hypothetical protein -
  NSQ12_RS10605 (NSQ12_10605) - 2112710..2113615 (+) 906 WP_339174707.1 S8 family serine peptidase -
  NSQ12_RS10610 (NSQ12_10610) - 2113635..2114552 (+) 918 WP_339174709.1 SAR2788 family putative toxin -
  NSQ12_RS10615 (NSQ12_10615) - 2114581..2114946 (+) 366 WP_339174711.1 hypothetical protein -
  NSQ12_RS10620 (NSQ12_10620) - 2115091..2115349 (+) 259 Protein_2038 SOS response-associated peptidase family protein -
  NSQ12_RS10625 (NSQ12_10625) - 2115624..2115998 (+) 375 WP_021481445.1 YoqO family protein -
  NSQ12_RS10630 (NSQ12_10630) - 2116804..2116950 (+) 147 Protein_2040 phage holin -
  NSQ12_RS10635 (NSQ12_10635) rapC 2117084..2118214 (+) 1131 WP_032725937.1 tetratricopeptide repeat protein Regulator
  NSQ12_RS10640 (NSQ12_10640) - 2118204..2118347 (+) 144 WP_153801665.1 hypothetical protein -
  NSQ12_RS10645 (NSQ12_10645) - 2118501..2118701 (-) 201 WP_021481449.1 hypothetical protein -
  NSQ12_RS10650 (NSQ12_10650) - 2118924..2119096 (-) 173 Protein_2044 hypothetical protein -
  NSQ12_RS10655 (NSQ12_10655) - 2119091..2119246 (-) 156 Protein_2045 T7SS effector LXG polymorphic toxin -
  NSQ12_RS10660 (NSQ12_10660) - 2119345..2119902 (-) 558 WP_029318053.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=964065 NSQ12_RS10635 WP_032725937.1 2117084..2118214(+) (rapC) [Bacillus sp. PS95]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=964065 NSQ12_RS10635 WP_032725937.1 2117084..2118214(+) (rapC) [Bacillus sp. PS95]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment