Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NSQ12_RS07890 Genome accession   NZ_CP150160
Coordinates   1478178..1478642 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus sp. PS95     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473178..1483642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS07870 (NSQ12_07870) kinA 1473644..1475464 (+) 1821 WP_080529263.1 sporulation histidine kinase KinA -
  NSQ12_RS07875 (NSQ12_07875) - 1475475..1476656 (-) 1182 WP_014479654.1 aminotransferase A -
  NSQ12_RS07880 (NSQ12_07880) - 1476858..1477019 (-) 162 WP_003245246.1 hypothetical protein -
  NSQ12_RS07885 (NSQ12_07885) cheV 1477223..1478134 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  NSQ12_RS07890 (NSQ12_07890) kre 1478178..1478642 (-) 465 WP_003232406.1 YkyB family protein Regulator
  NSQ12_RS07895 (NSQ12_07895) - 1478768..1480060 (-) 1293 WP_014479656.1 MFS transporter -
  NSQ12_RS07900 (NSQ12_07900) - 1480136..1480630 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  NSQ12_RS07905 (NSQ12_07905) - 1480687..1481547 (-) 861 WP_339176432.1 metallophosphoesterase -
  NSQ12_RS07910 (NSQ12_07910) fadH 1481690..1482454 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=964058 NSQ12_RS07890 WP_003232406.1 1478178..1478642(-) (kre) [Bacillus sp. PS95]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=964058 NSQ12_RS07890 WP_003232406.1 1478178..1478642(-) (kre) [Bacillus sp. PS95]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment