Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DAETH_RS04825 Genome accession   NZ_AP026560
Coordinates   928432..928815 (+) Length   127 a.a.
NCBI ID   WP_264776788.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 923432..933815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS04800 (DAETH_09550) - 923640..923915 (+) 276 WP_264776783.1 hypothetical protein -
  DAETH_RS04805 (DAETH_09560) - 923912..924931 (+) 1020 WP_264776784.1 phosphotransferase family protein -
  DAETH_RS04810 (DAETH_09570) - 924935..926263 (+) 1329 WP_264776785.1 PQQ-like beta-propeller repeat protein -
  DAETH_RS04815 (DAETH_09580) - 926224..927369 (-) 1146 WP_264776786.1 DNA glycosylase AlkZ-like family protein -
  DAETH_RS04820 (DAETH_09590) yedA 927450..928361 (-) 912 WP_264776787.1 drug/metabolite exporter YedA -
  DAETH_RS04825 (DAETH_09600) comEA 928432..928815 (+) 384 WP_264776788.1 ComEA family DNA-binding protein Machinery gene
  DAETH_RS04830 (DAETH_09610) comEC 928815..929855 (+) 1041 WP_319993727.1 ComEC/Rec2 family competence protein Machinery gene
  DAETH_RS04835 - 930478..930746 (+) 269 Protein_946 IS4 family transposase -
  DAETH_RS04840 (DAETH_09620) - 930808..932010 (+) 1203 WP_264776789.1 hypothetical protein -
  DAETH_RS04845 (DAETH_09630) - 932012..933064 (+) 1053 WP_264776790.1 hypothetical protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13045.08 Da        Isoelectric Point: 6.7214

>NTDB_id=96404 DAETH_RS04825 WP_264776788.1 928432..928815(+) (comEA) [Deinococcus aetherius strain ST0316]
MWISERHWTLLLAVGVLTVGGLALGPALFPQAHGPTVTHAEVPPPAGAQEPVAAPEYPATASVKPLISGRVNLNSASTEQ
LEALPKIGPALAARIVAGRPYRSLADLDQVSGIGPSTLSALTPLVTF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=96404 DAETH_RS04825 WP_264776788.1 928432..928815(+) (comEA) [Deinococcus aetherius strain ST0316]
GTGTGGATCTCGGAACGGCACTGGACGCTCCTTCTCGCGGTCGGCGTGCTGACGGTGGGCGGGCTCGCCCTCGGCCCCGC
CCTCTTCCCGCAGGCGCATGGGCCCACCGTGACCCACGCCGAAGTGCCTCCACCTGCCGGGGCGCAGGAGCCCGTCGCCG
CCCCCGAGTACCCGGCGACGGCGAGCGTGAAGCCGCTCATCTCGGGGAGAGTCAACCTCAACTCGGCGTCCACCGAACAG
CTCGAAGCTCTGCCCAAGATCGGCCCCGCCCTTGCTGCCCGCATCGTCGCCGGGCGCCCCTACCGCAGCCTCGCCGACCT
CGACCAGGTGAGCGGGATCGGTCCGTCCACACTCTCGGCCCTCACGCCGCTCGTGACGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.789

96.85

0.598

Multiple sequence alignment