Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DAETH_RS04830 Genome accession   NZ_AP026560
Coordinates   928815..929855 (+) Length   346 a.a.
NCBI ID   WP_319993727.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 930808..946492 928815..929855 flank 953


Gene organization within MGE regions


Location: 928815..946492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS04830 (DAETH_09610) comEC 928815..929855 (+) 1041 WP_319993727.1 ComEC/Rec2 family competence protein Machinery gene
  DAETH_RS04835 - 930478..930746 (+) 269 Protein_946 IS4 family transposase -
  DAETH_RS04840 (DAETH_09620) - 930808..932010 (+) 1203 WP_264776789.1 hypothetical protein -
  DAETH_RS04845 (DAETH_09630) - 932012..933064 (+) 1053 WP_264776790.1 hypothetical protein -
  DAETH_RS04850 (DAETH_09640) - 933218..934540 (+) 1323 WP_264776791.1 HEPN/Toprim-associated domain-containing protein -
  DAETH_RS04855 - 935311..936162 (+) 852 WP_264776792.1 DUF6602 domain-containing protein -
  DAETH_RS04860 (DAETH_09660) - 936506..937243 (-) 738 WP_264776793.1 Ada metal-binding domain-containing protein -
  DAETH_RS04865 (DAETH_09670) istB 937475..938275 (-) 801 WP_264776794.1 IS21-like element helper ATPase IstB -
  DAETH_RS04870 (DAETH_09680) istA 938272..939558 (-) 1287 WP_264776795.1 IS21 family transposase -
  DAETH_RS04875 (DAETH_09690) - 939893..940678 (-) 786 WP_264774389.1 IS982 family transposase -
  DAETH_RS04880 (DAETH_09700) - 940732..940947 (-) 216 WP_264776796.1 hypothetical protein -
  DAETH_RS04885 (DAETH_09710) - 941228..941527 (-) 300 WP_264776797.1 hypothetical protein -
  DAETH_RS04890 (DAETH_09720) - 941557..942192 (+) 636 WP_264776798.1 hypothetical protein -
  DAETH_RS04895 (DAETH_09730) - 942211..942642 (+) 432 WP_264776799.1 hypothetical protein -
  DAETH_RS04900 (DAETH_09740) - 942731..943015 (+) 285 WP_264776800.1 type IIL restriction-modification enzyme MmeI -
  DAETH_RS04905 (DAETH_09750) - 943080..945317 (-) 2238 WP_264776801.1 site-specific integrase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36298.60 Da        Isoelectric Point: 10.7319

>NTDB_id=96405 DAETH_RS04830 WP_319993727.1 928815..929855(+) (comEC) [Deinococcus aetherius strain ST0316]
MLGRHAAAPGGRAFTPSPTRAASGRLAWSVPLACGVMSGILLGLGVWWGLLVGVLGAALAVLDGRAALALLALVGAGLGF
GSERLNAARPDRMAPWVGAQVTLTGEWDGQFLRLEDPPARVAVSPKPRVPPGRVVLSGRLVRPEGQDVPGGFDQAAWLRG
QGGLFVPAPTTVLVGARLRRNTPEGGPHGWFRRGLTVGLGEREAALMQAVELGDRGDIGREDFGEGYSVRDAFARSGLSH
LMALSGQNVALLTGAVVWLLMWLRVPLGWRYAGALLFLGPYLLLVGVSPSIFRAVLMGGAVLLAYAIGRGRPDPYGVIAL
AAALCLLPFPLWLLDVGFLICTMLST

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=96405 DAETH_RS04830 WP_319993727.1 928815..929855(+) (comEC) [Deinococcus aetherius strain ST0316]
ATGCTCGGGAGACACGCCGCCGCGCCCGGCGGCCGAGCGTTCACCCCGAGTCCCACCCGCGCCGCCTCCGGGCGTCTCGC
GTGGTCCGTCCCGCTCGCCTGCGGGGTGATGAGCGGCATCCTGCTTGGGCTGGGAGTGTGGTGGGGCCTGCTCGTGGGCG
TGCTCGGCGCGGCCCTCGCCGTTCTCGACGGAAGGGCCGCGCTGGCGTTGCTCGCCCTCGTCGGGGCAGGGCTCGGCTTC
GGCTCGGAGCGCCTGAACGCCGCCAGACCCGACCGGATGGCTCCCTGGGTGGGCGCGCAGGTCACGCTGACGGGCGAGTG
GGACGGGCAGTTCCTCCGCCTTGAAGACCCGCCCGCCCGAGTGGCCGTGTCCCCGAAACCGCGTGTCCCACCGGGCCGGG
TGGTGCTCAGCGGTCGCCTCGTGCGCCCGGAGGGGCAGGATGTTCCGGGCGGTTTTGACCAGGCGGCCTGGTTGCGCGGG
CAGGGGGGCCTCTTCGTCCCCGCGCCCACCACCGTCCTCGTCGGTGCCCGGCTGCGGCGGAACACGCCGGAAGGTGGCCC
GCACGGCTGGTTCCGCCGGGGCCTCACCGTCGGTCTGGGGGAGCGGGAGGCGGCGCTGATGCAGGCGGTCGAACTCGGCG
ACCGGGGTGACATCGGGCGCGAGGACTTCGGGGAGGGGTACTCGGTGCGGGACGCCTTCGCCCGCTCGGGCCTCTCGCAT
CTGATGGCGCTGAGCGGCCAGAACGTCGCCCTGCTGACGGGCGCGGTGGTCTGGCTGCTGATGTGGTTGCGGGTGCCGCT
GGGGTGGCGTTATGCGGGGGCGCTCCTCTTCCTGGGGCCCTACCTGCTGCTCGTCGGCGTGTCCCCCAGCATCTTCCGCG
CCGTGCTGATGGGCGGGGCCGTGCTCCTCGCCTATGCCATCGGGCGCGGGCGGCCCGATCCCTACGGCGTCATCGCCCTC
GCCGCCGCCCTTTGCCTGCTCCCCTTCCCGTTGTGGCTGCTCGACGTGGGCTTTCTTATATGCACTATGCTGTCAACATA
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(229-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

93.353

0.595

Multiple sequence alignment