Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ12_RS00245 Genome accession   NZ_CP150160
Coordinates   44298..44588 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus sp. PS95     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39298..49588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS00205 (NSQ12_00205) darA 39321..39650 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  NSQ12_RS00210 (NSQ12_00210) - 39663..40103 (+) 441 WP_339175635.1 YaaR family protein -
  NSQ12_RS00215 (NSQ12_00215) holB 40115..41104 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  NSQ12_RS00220 (NSQ12_00220) ricT 41107..41934 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  NSQ12_RS00225 (NSQ12_00225) yabA 41949..42308 (+) 360 WP_339175637.1 replication initiation-control protein YabA -
  NSQ12_RS00230 (NSQ12_00230) - 42367..43110 (+) 744 WP_339175639.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NSQ12_RS00235 (NSQ12_00235) - 43097..43396 (+) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  NSQ12_RS00240 (NSQ12_00240) rsmI 43371..44249 (+) 879 WP_033884645.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NSQ12_RS00245 (NSQ12_00245) abrB 44298..44588 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NSQ12_RS00250 (NSQ12_00250) metG 45083..47077 (+) 1995 WP_088325191.1 methionine--tRNA ligase -
  NSQ12_RS00255 (NSQ12_00255) - 47156..47923 (+) 768 WP_088325192.1 TatD family hydrolase -
  NSQ12_RS00260 (NSQ12_00260) - 48079..49392 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=964030 NSQ12_RS00245 WP_003226760.1 44298..44588(-) (abrB) [Bacillus sp. PS95]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=964030 NSQ12_RS00245 WP_003226760.1 44298..44588(-) (abrB) [Bacillus sp. PS95]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1