Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NST79_RS14540 Genome accession   NZ_CP150159
Coordinates   2772036..2772782 (-) Length   248 a.a.
NCBI ID   WP_212058953.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2767036..2777782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS14515 (NST79_14515) mreC 2767442..2768314 (-) 873 WP_212058949.1 rod shape-determining protein MreC -
  NST79_RS14520 (NST79_14520) mreB 2768345..2769358 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NST79_RS14525 (NST79_14525) radC 2769450..2770145 (-) 696 WP_014480455.1 DNA repair protein RadC -
  NST79_RS14530 (NST79_14530) - 2770182..2770751 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  NST79_RS14535 (NST79_14535) spoIIB 2770904..2771902 (-) 999 WP_212058951.1 SPOR domain-containing protein -
  NST79_RS14540 (NST79_14540) comC 2772036..2772782 (-) 747 WP_212058953.1 A24 family peptidase Machinery gene
  NST79_RS14545 (NST79_14545) - 2772923..2774215 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NST79_RS14550 (NST79_14550) valS 2774275..2776917 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  NST79_RS14555 (NST79_14555) - 2777365..2777556 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=964006 NST79_RS14540 WP_212058953.1 2772036..2772782(-) (comC) [Bacillus sp. PS196]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFALIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=964006 NST79_RS14540 WP_212058953.1 2772036..2772782(-) (comC) [Bacillus sp. PS196]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGCTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992