Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NST79_RS12620 Genome accession   NZ_CP150159
Coordinates   2441628..2442431 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2436628..2447431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS12595 (NST79_12595) - 2437766..2438497 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  NST79_RS12600 (NST79_12600) - 2438576..2439196 (-) 621 WP_212058861.1 N-acetylmuramoyl-L-alanine amidase -
  NST79_RS12605 (NST79_12605) - 2439216..2439512 (-) 297 WP_014480225.1 hypothetical protein -
  NST79_RS12610 (NST79_12610) - 2439820..2439972 (+) 153 WP_014480226.1 hypothetical protein -
  NST79_RS12615 (NST79_12615) - 2440045..2441163 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  NST79_RS12620 (NST79_12620) spo0A 2441628..2442431 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NST79_RS12625 (NST79_12625) spoIVB 2442707..2443987 (-) 1281 WP_212058862.1 SpoIVB peptidase -
  NST79_RS12630 (NST79_12630) recN 2444162..2445892 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  NST79_RS12635 (NST79_12635) argR 2445929..2446378 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NST79_RS12640 (NST79_12640) - 2446476..2447321 (-) 846 WP_212058863.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=963987 NST79_RS12620 WP_003226427.1 2441628..2442431(-) (spo0A) [Bacillus sp. PS196]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=963987 NST79_RS12620 WP_003226427.1 2441628..2442431(-) (spo0A) [Bacillus sp. PS196]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1