Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NST79_RS11610 Genome accession   NZ_CP150159
Coordinates   2260907..2261527 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2255907..2266527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS11570 (NST79_11570) - 2257038..2257544 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  NST79_RS11575 (NST79_11575) - 2257682..2258101 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  NST79_RS11580 (NST79_11580) - 2258122..2258499 (-) 378 WP_015251832.1 YppG family protein -
  NST79_RS11585 (NST79_11585) - 2258687..2258875 (+) 189 WP_003230690.1 YppF family protein -
  NST79_RS11590 (NST79_11590) - 2258914..2259285 (-) 372 WP_003246080.1 YppE family protein -
  NST79_RS11595 (NST79_11595) - 2259331..2259576 (-) 246 WP_015251831.1 YppD family protein -
  NST79_RS11600 (NST79_11600) sspM 2259775..2259879 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NST79_RS11605 (NST79_11605) - 2259904..2260866 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  NST79_RS11610 (NST79_11610) recU 2260907..2261527 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NST79_RS11615 (NST79_11615) - 2261549..2264308 (+) 2760 WP_212060687.1 PBP1A family penicillin-binding protein -
  NST79_RS11620 (NST79_11620) - 2264384..2264878 (-) 495 WP_009967579.1 YpoC family protein -
  NST79_RS11625 (NST79_11625) nth 2264875..2265534 (-) 660 WP_009967580.1 endonuclease III -
  NST79_RS11630 (NST79_11630) dnaD 2265553..2266251 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=963986 NST79_RS11610 WP_004399067.1 2260907..2261527(+) (recU) [Bacillus sp. PS196]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=963986 NST79_RS11610 WP_004399067.1 2260907..2261527(+) (recU) [Bacillus sp. PS196]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1