Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NST79_RS07880 Genome accession   NZ_CP150159
Coordinates   1479690..1480265 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474690..1485265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS07850 (NST79_07850) dapD 1474877..1475587 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NST79_RS07855 (NST79_07855) - 1475657..1476781 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  NST79_RS07860 (NST79_07860) - 1476843..1477088 (+) 246 WP_003232382.1 YkuS family protein -
  NST79_RS07865 (NST79_07865) mscT 1477125..1477928 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  NST79_RS07870 (NST79_07870) ahpA 1478165..1478707 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  NST79_RS07875 (NST79_07875) ykuV 1478778..1479224 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  NST79_RS07880 (NST79_07880) rok 1479690..1480265 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  NST79_RS07885 (NST79_07885) cse15 1480306..1481271 (-) 966 WP_160221549.1 spore protein Cse15 -
  NST79_RS07890 (NST79_07890) - 1481408..1482007 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  NST79_RS07895 (NST79_07895) - 1482058..1483077 (+) 1020 WP_046160343.1 molybdopterin-synthase adenylyltransferase MoeB -
  NST79_RS07900 (NST79_07900) glp 1483095..1484387 (+) 1293 WP_212059075.1 gephyrin-like molybdotransferase Glp -
  NST79_RS07905 (NST79_07905) mobB 1484348..1484869 (+) 522 WP_212059073.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=963980 NST79_RS07880 WP_003232378.1 1479690..1480265(+) (rok) [Bacillus sp. PS196]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=963980 NST79_RS07880 WP_003232378.1 1479690..1480265(+) (rok) [Bacillus sp. PS196]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1