Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DAETH_RS02515 Genome accession   NZ_AP026560
Coordinates   477896..478450 (+) Length   184 a.a.
NCBI ID   WP_264776368.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472896..483450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS02475 (DAETH_04870) - 473266..473535 (-) 270 WP_264776360.1 DUF3248 domain-containing protein -
  DAETH_RS02480 (DAETH_04880) - 473589..473852 (+) 264 WP_264776361.1 hypothetical protein -
  DAETH_RS02485 (DAETH_04890) - 473840..474592 (-) 753 WP_264776362.1 NAD-dependent deacylase -
  DAETH_RS02490 (DAETH_04900) - 474691..474969 (+) 279 WP_264776363.1 type II toxin-antitoxin system HicB family antitoxin -
  DAETH_RS02495 (DAETH_04910) - 474966..475394 (+) 429 WP_264776364.1 TA system VapC family ribonuclease toxin -
  DAETH_RS02500 (DAETH_04920) - 475531..476433 (-) 903 WP_264776365.1 hypothetical protein -
  DAETH_RS02505 (DAETH_04930) - 476591..477109 (-) 519 WP_264776366.1 RNA 2'-phosphotransferase -
  DAETH_RS02510 (DAETH_04940) paaI 477469..477843 (+) 375 WP_264776367.1 hydroxyphenylacetyl-CoA thioesterase PaaI -
  DAETH_RS02515 (DAETH_04950) ddrB 477896..478450 (+) 555 WP_264776368.1 single-stranded DNA-binding protein Machinery gene
  DAETH_RS02520 (DAETH_04960) - 478455..478934 (-) 480 WP_264776369.1 hypothetical protein -
  DAETH_RS02530 (DAETH_04970) - 479191..479889 (-) 699 WP_264776370.1 metallophosphoesterase -
  DAETH_RS02535 (DAETH_04980) - 480036..480575 (+) 540 WP_264776371.1 GNAT family N-acetyltransferase -
  DAETH_RS02540 (DAETH_04990) rocF 480694..481593 (+) 900 WP_264776372.1 arginase -
  DAETH_RS02545 (DAETH_05000) - 481717..482565 (-) 849 WP_264776373.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20441.86 Da        Isoelectric Point: 6.8879

>NTDB_id=96398 DAETH_RS02515 WP_264776368.1 477896..478450(+) (ddrB) [Deinococcus aetherius strain ST0316]
MLHIEFITDLGARVTVDVESEGKLLDVQRQYGRLGWTSGDVPTGGYQFPLENEPDFDWSLIGARKWTNPEGEEMILHKGH
AYRRRELEAVDSRKLKLPAAVKYSRGAKNTDPDHVREKADGEFEYVTLAIFRGGRRQERYAIPGGAGAGRAPAANASRPA
PARPQAAPTRTATVPRVEDEETPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=96398 DAETH_RS02515 WP_264776368.1 477896..478450(+) (ddrB) [Deinococcus aetherius strain ST0316]
ATGCTGCATATCGAATTCATCACCGACCTGGGCGCGCGGGTGACCGTGGACGTGGAGAGCGAAGGAAAGCTGCTGGACGT
GCAACGCCAGTACGGGAGGCTGGGTTGGACGAGCGGCGACGTGCCGACCGGGGGCTACCAGTTCCCGCTGGAGAACGAGC
CGGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGACGAACCCCGAGGGCGAGGAGATGATCCTGCACAAGGGGCAT
GCCTACCGCCGCCGTGAGCTGGAGGCCGTGGACAGCCGCAAGCTGAAGCTCCCCGCCGCCGTGAAGTACAGCCGGGGCGC
CAAGAACACCGACCCCGACCACGTCCGCGAGAAGGCCGACGGCGAGTTCGAGTACGTCACCCTGGCGATCTTCCGGGGCG
GCCGCCGTCAGGAACGCTACGCCATCCCCGGCGGCGCGGGCGCAGGTCGTGCCCCTGCCGCGAACGCCTCCCGCCCGGCC
CCGGCCCGTCCTCAGGCGGCGCCCACCCGTACGGCGACGGTGCCGCGCGTGGAGGACGAGGAGACGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

73.936

100

0.755

Multiple sequence alignment