Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NST79_RS05715 Genome accession   NZ_CP150159
Coordinates   1093646..1094224 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. PS196     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088646..1099224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS05695 (NST79_05695) hemAT 1089157..1090455 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  NST79_RS05700 (NST79_05700) - 1090594..1092123 (-) 1530 WP_212058965.1 FAD-dependent oxidoreductase -
  NST79_RS05705 (NST79_05705) - 1092235..1093092 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NST79_RS05710 (NST79_05710) - 1093120..1093353 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NST79_RS05715 (NST79_05715) comK 1093646..1094224 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NST79_RS05720 (NST79_05720) - 1094271..1095170 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  NST79_RS05725 (NST79_05725) - 1095387..1095656 (+) 270 WP_072173850.1 excalibur calcium-binding domain-containing protein -
  NST79_RS05730 (NST79_05730) - 1095699..1097168 (-) 1470 WP_015252422.1 sodium:solute symporter -
  NST79_RS05735 (NST79_05735) - 1097165..1097365 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NST79_RS05740 (NST79_05740) - 1097573..1097935 (-) 363 WP_212058966.1 hypothetical protein -
  NST79_RS05745 (NST79_05745) - 1098087..1098710 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NST79_RS05750 (NST79_05750) lepB 1098712..1099218 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=963967 NST79_RS05715 WP_003245329.1 1093646..1094224(+) (comK) [Bacillus sp. PS196]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=963967 NST79_RS05715 WP_003245329.1 1093646..1094224(+) (comK) [Bacillus sp. PS196]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1